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Report for CCDS5218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5218.1 Public Homo sapiens 6 NUP43 24 110 108 CCDS HistoryNCBI Gene:348995Re-query CCDS DB by CCDS ID:5218.1Re-query CCDS DB by GeneID:348995See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5218.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340413.7 ENSP00000342262.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340413.7Link to Ensembl Protein Viewer:ENSP00000342262.2Re-query CCDS DB by Nucleotide ID:ENST00000340413Re-query CCDS DB by Protein ID:ENSP00000342262
Original member Current member NCBI NM_198887.3 NP_942590.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198887.3Link to Protein Sequence:NP_942590.1Re-query CCDS DB by Nucleotide ID:NM_198887Re-query CCDS DB by Protein ID:NP_942590Link to BLAST:NP_942590.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_942590.1 380 Q8NFH3-1 380 100% 0 0

Chromosomal Locations for CCDS 5218.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 149726969 149727198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149731613 149731735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149736471 149736622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149738643 149738778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149742390 149742570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149743638 149743715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149745940 149746062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149746376 149746495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGAGGAAATTTATGCGAAGTTTGTGTCCCAGAAAATCAGCAAAACCCGCTGGCGACCGCTGCCTCCGG
GAAGTTTACAGACCGCGGAGACGTTCGCTACAGGATCTTGGGACAATGAGGAAAATTATATTTCACTGTG
GTCTATTGGAGATTTTGGAAACTTGGACTCTGATGGAGGGTTTGAAGGAGACCATCAGTTATTGTGTGAT
ATCAGACACCATGGTGATGTAATGGATTTACAGTTTTTTGACCAGGAAAGAATTGTCGCTGCTTCATCAA
CAGGATGTGTAACAGTTTTCCTTCACCATCCAAATAACCAGACTCTGTCAGTCAACCAGCAGTGGACTAC
AGCTCACTACCACACAGGCCCTGGCAGTCCTTCCTATAGCAGTGCACCATGTACAGGTGTTGTGTGCAAC
AACCCAGAAATCGTTACAGTTGGAGAGGATGGTCGAATAAATCTCTTCAGAGCTGATCACAAGGAAGCTG
TAAGAACCATAGACAATGCAGATAGTAGTACACTCCATGCTGTAACCTTTCTTCGAACTCCTGAGATTCT
TACTGTAAATTCAATTGGACAGTTGAAAATATGGGATTTCAGACAACAAGGAAATGAGCCTTCTCAGATA
TTGTCACTGACTGGTGACCGAGTGCCACTCCACTGTGTTGATAGACATCCCAACCAACAGCATGTTGTAG
CTACTGGTGGCCAAGATGGAATGTTGAGTATTTGGGATGTTAGACAAGGTACTATGCCTGTATCTCTGCT
GAAGGCTCATGAAGCTGAAATGTGGGAAGTTCACTTTCACCCATCCAACCCAGAACATCTTTTTACCTGC
TCTGAAGATGGATCCCTCTGGCACTGGGATGCTTCCACAGATGTACCTGAAAAGTCGTCACTCTTTCACC
AAGGAGGAAGAAGCAGTACTTTTTTGTCTCATAGCATTAGTAACCAAGCTAATGTTCACCAGTCTGTCAT
TAGCTCCTGGCTCAGCACTGATCCTGCAAAAGACCGAATTGAAATCACAAGCTTACTTCCCAGTAGGTCT
CTGTCTGTGAACACTTTGGATGTTTTAGGTCCTTGTCTTGTTTGTGGAACCGATGCAGAAGCAATTTATG
TTACTAGACATCTTTTTTCGTAG

Translation (380 aa):
MEEIYAKFVSQKISKTRWRPLPPGSLQTAETFATGSWDNEENYISLWSIGDFGNLDSDGGFEGDHQLLCD
IRHHGDVMDLQFFDQERIVAASSTGCVTVFLHHPNNQTLSVNQQWTTAHYHTGPGSPSYSSAPCTGVVCN
NPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQI
LSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTC
SEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQANVHQSVISSWLSTDPAKDRIEITSLLPSRS
LSVNTLDVLGPCLVCGTDAEAIYVTRHLFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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