NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52172.1 Public Mus musculus 7 2200002D01Rik 23 108 98 CCDS HistoryNCBI Gene:72275Re-query CCDS DB by CCDS ID:52172.1Re-query CCDS DB by GeneID:72275See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032808.5 ENSMUSP00000032808.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032808.5Link to Ensembl Protein Viewer:ENSMUSP00000032808.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032808Re-query CCDS DB by Protein ID:ENSMUSP00000032808
Original member Current member NCBI NM_028179.1 NP_082455.1 Accepted alive Link to Nucleotide Sequence:NM_028179.1Link to Protein Sequence:NP_082455.1Re-query CCDS DB by Nucleotide ID:NM_028179Re-query CCDS DB by Protein ID:NP_082455Link to BLAST:NP_082455.1

Chromosomal Locations for CCDS 52172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29247594 29247734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29247897 29247965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29248128 29248240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29248357 29248378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGGAGTTTGACTTGGCCGCAGCCCTGGGCCCTGGTTCTAAGAAGCCAGAGGGGGCAGGCCATGTGGGAG
ACCCCAAACACTGTCCTCTTAAAGCGCCGGGCGGGCCAGAGGCAGGCGCTGCTCACAAGCCGAGGCGTGT
CTCTGGCAGCTCCTCCGACTCCAGCAGCAGTAGCAGCTCCAGCGACTCAGAGGCAGAGGGGAAGGAGTAT
GCCGCTGGCTGCAAGAAGCATGAACGCTCCTCAGACAAGGCCAAGAAACCCAAGGTGAAGAAGGAGAAGA
TGGAGAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGGAGAAGAAGGAGAAGAAGGCCCCCCATTGA

Translation (114 aa):
MEFDLAAALGPGSKKPEGAGHVGDPKHCPLKAPGGPEAGAAHKPRRVSGSSSDSSSSSSSSDSEAEGKEY
AAGCKKHERSSDKAKKPKVKKEKMEKKEKKEKKEKEKKEKKAPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH