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Report for CCDS52134.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52134.1 Public Mus musculus 7 Vmn1r173 23 108 98 CCDS HistoryNCBI Gene:545934Re-query CCDS DB by CCDS ID:52134.1Re-query CCDS DB by GeneID:545934See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52134.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000174055.2 ENSMUSP00000134645.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174055.2Link to Ensembl Protein Viewer:ENSMUSP00000134645.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174055Re-query CCDS DB by Protein ID:ENSMUSP00000134645
Original member Current member EBI ENSMUST00000227987.1 ENSMUSP00000153884.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227987.1Link to Ensembl Protein Viewer:ENSMUSP00000153884.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227987Re-query CCDS DB by Protein ID:ENSMUSP00000153884
Original member Current member EBI ENSMUST00000226233.1 ENSMUSP00000154603.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226233.1Link to Ensembl Protein Viewer:ENSMUSP00000154603.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226233Re-query CCDS DB by Protein ID:ENSMUSP00000154603
Original member Current member NCBI NM_001166718.1 NP_001160190.1 Accepted alive Link to Nucleotide Sequence:NM_001166718.1Link to Protein Sequence:NP_001160190.1Re-query CCDS DB by Nucleotide ID:NM_001166718Re-query CCDS DB by Protein ID:NP_001160190Link to BLAST:NP_001160190.1

Chromosomal Locations for CCDS 52134.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 23702342 23703283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGTCTGCTCTTAATAAAGCCCTGAAAACCACTGAGGAAGTGGCCCTTCAAATCATCTTGCTTTGCCAGG
TTGGTATTGCAGCTGTGGCCAACATTCTTCTGCTTGTCCATAATTTATCTCCTAACTTTGCTGGCCCTCA
ACTGAGACCAAAACATGTCATTCTTGCCCACATTACTGTAGGCAATCTCTTGATTATCCTCCTCACTGGG
TTTCCAAGCAATATCATAGTTTTTGTTCCAAGGAATCCTCTAAATGACCTCAACTGTAAGCTTGAGTACT
TCATTCGTCTGGTGGCTCGAAGTGCAAACATGTGTACTACTTGTGTCCTGAGCACTTACCAGTTTATCGT
TCTTGTTCCTGGCAAATGGAGTAGAATGATACTCAGAGGAAATACCTCCACATTTGTGCACTATTCTTGT
AATAGTTGTTGGATTATCAGTGTCTTAAATAATGTCTACATCCCTATAAAAATCAGTGGTCCATGGAACA
CAGACAATGACACTGACCTGAACAGCAAGTGGGTATGTTCTATGTCTGGTTTCGAGTTAGTCATGGTCTT
CTTACGATTTGTCCATGATACCATGTTCATCAGCATCATGGTATGGACCAGTGTTTCCATGATGCTTCTC
TTGTATAGACATCACCAAAGCCTGAAACACATTCACAGGTCCAATGGGAGCCTGGGACTTCAACCAGAGG
CCAGAGCAGCATACACAATTCTCATGCTGGTGGTCACATTTGTATGCTTTTATCTTCTCGATTGTATGTG
TATTTTCTTTCACATTTCTTTTGTGCATTTTCGTGTATGGTTGAGGCATGTCAATGAAATTTTGGCTGCA
AGTTTCCCCACCCTTTCTCCCTTAATGTTGATCTTTAGGGGTCCTAAAAAAATATCAGCCAAAGGGATAA
ACACAGAAAATGCTTTTATTAACAGTCACTGA

Translation (313 aa):
MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTG
FPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSC
NSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLL
LYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAA
SFPTLSPLMLIFRGPKKISAKGINTENAFINSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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