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Report for CCDS51937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51937.1 Public Mus musculus 6 Gpr19 23 108 98 CCDS HistoryNCBI Gene:14760Re-query CCDS DB by CCDS ID:51937.1Re-query CCDS DB by GeneID:14760See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 51937.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046255.13 ENSMUSP00000047630.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046255.13Link to Ensembl Protein Viewer:ENSMUSP00000047630.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046255Re-query CCDS DB by Protein ID:ENSMUSP00000047630
Original member Current member NCBI NM_001167694.2 NP_001161166.1 Accepted alive Link to Nucleotide Sequence:NM_001167694.2Link to Protein Sequence:NP_001161166.1Re-query CCDS DB by Nucleotide ID:NM_001167694Re-query CCDS DB by Protein ID:NP_001161166Link to BLAST:NP_001161166.1
Original member Current member NCBI NM_001167697.2 NP_001161169.1 Accepted alive Link to Nucleotide Sequence:NM_001167697.2Link to Protein Sequence:NP_001161169.1Re-query CCDS DB by Nucleotide ID:NM_001167697Re-query CCDS DB by Protein ID:NP_001161169Link to BLAST:NP_001161169.1
Original member Current member NCBI NM_001167699.2 NP_001161171.1 Accepted alive Link to Nucleotide Sequence:NM_001167699.2Link to Protein Sequence:NP_001161171.1Re-query CCDS DB by Nucleotide ID:NM_001167699Re-query CCDS DB by Protein ID:NP_001161171Link to BLAST:NP_001161171.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161166.1 415 Q61121-1 415 100% 0 0
NP_001161169.1 415 Q61121-1 415 100% 0 0
NP_001161171.1 415 Q61121-1 415 100% 0 0

Chromosomal Locations for CCDS 51937.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 134869213 134870460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGTTTTTGCTCACAGAATGGATAACGACCAGCCGCCTGTGGTGACTGCCACCCTGCTGGTGCCCCTTC
AG
AACAGCAGCTGCGCGGAAGCAGCTGAGGCCCTGCTGCCCCATGGCCTGATGGGATTGCATGAGGAGCA
C
AGCTGGATGAGCAACAGGACAGAGCTTCAGTACGAGCTGAACCCTGGAGAGGTGGCCACCGCCAGCATC
TTC
TTTGGCGCTTTGTGGTTGTTCTCCATCTTTGGCAATTCCCTGGTATGTCTGGTCATCCACCGGAGCC
GG
AGGACTCAGTCCACCACCAACTACTTCGTGGTGTCCATGGCGTGTGCTGACCTTCTCATCAGCGTGGC
C
AGCACGCCGTTTGTCGTGCTGCAGTTCACCACCGGGAGGTGGACCCTGGGTAGCGCCATGTGCAAGGTG
GTC
CGCTACTTCCAGTACCTCACCCCCGGCGTGCAGATCTACGTGCTGCTCTCCATCTGCATCGACCGCT
TC
TATACCATCGTCTACCCGCTGAGCTTCAAGGTGTCCCGAGAGAAGGCCAAGAAAATGATTGCAGCCTC
C
TGGATCTTGGACGCGGCCTTCGTGACGCCTGTCTTCTTTTTCTACGGCTCTAACTGGGATAGTCACTGT
AAC
TACTTCCTCCCTCCCTCCTGGGAGGGAACTGCCTATACCGTCATCCACTTCTTGGTGGGCTTCGTGA
TT
CCCTCCATCCTCATAATCCTGTTTTACCAGAAGGTCATAAAGTATATCTGGAGAATAGGCACGGACGG
G
CGGACGCTGAGAAGGACGATGAACATTGTCCCCAGGACAAAGGTGAAAACGGTCAAGATGTTCCTGCTC
TTG
AACCTAGTGTTCCTGTTCTCCTGGCTACCTTTCCATGTGGCTCAGCTCTGGCATCCCCATGAGCAAG
AC
TACAAGAAGAGCTCCCTTGTCTTCACGGCAGTCACGTGGGTATCTTTCAGCTCTTCAGCCTCGAAACC
C
ACTCTGTACTCTATTTATAATGCCAATTTTCGGAGAGGGATGAAAGAGACATTCTGCATGTCCTCGATG
AAA
TGCTACCGCAGCAATGCCTACACCATCACGACCAGCTCACGGATGGCCAAAAGAAACTATGTGGGCA
TT
TCGGAAATCCCTCCCGTGAGCAGGACCATAACCAAAGACTCCATCTATGACTCATTTGACCGGGAGGC
C
AGGGAGAAGAAGCTCGCCTGGCCCATCAACTCAAACCCTCCAAACACTTTTGTCTGA


Translation (415 aa):
MVFAHRMDNDQPPVVTATLLVPLQNSSCAEAAEALLPHGLMGLHEEHSWMSNRTELQYELNPGEVATASI
F
FGALWLFSIFGNSLVCLVIHRSRRTQSTTNYFVVSMACADLLISVASTPFVVLQFTTGRWTLGSAMCKV
V
RYFQYLTPGVQIYVLLSICIDRFYTIVYPLSFKVSREKAKKMIAASWILDAAFVTPVFFFYGSNWDSHC
N
YFLPPSWEGTAYTVIHFLVGFVIPSILIILFYQKVIKYIWRIGTDGRTLRRTMNIVPRTKVKTVKMFLL
L
NLVFLFSWLPFHVAQLWHPHEQDYKKSSLVFTAVTWVSFSSSASKPTLYSIYNANFRRGMKETFCMSSM
K
CYRSNAYTITTSSRMAKRNYVGISEIPPVSRTITKDSIYDSFDREAREKKLAWPINSNPPNTFV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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