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Report for CCDS51854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51854.1 Public Mus musculus 6 Prickle2 23 108 98 CCDS HistoryNCBI Gene:243548Re-query CCDS DB by CCDS ID:51854.1Re-query CCDS DB by GeneID:243548See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113445.1 ENSMUSP00000109072.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113445.1Link to Ensembl Protein Viewer:ENSMUSP00000109072.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113445Re-query CCDS DB by Protein ID:ENSMUSP00000109072
Original member Current member EBI ENSMUST00000113446.7 ENSMUSP00000109073.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113446.7Link to Ensembl Protein Viewer:ENSMUSP00000109073.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113446Re-query CCDS DB by Protein ID:ENSMUSP00000109073
Original member Current member EBI ENSMUST00000113447.7 ENSMUSP00000109074.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113447.7Link to Ensembl Protein Viewer:ENSMUSP00000109074.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113447Re-query CCDS DB by Protein ID:ENSMUSP00000109074
Original member NCBI NM_001134459.1 NP_001127931.1 Updated not alive Link to Nucleotide Sequence:NM_001134459.1Link to Protein Sequence:NP_001127931.1Re-query CCDS DB by Nucleotide ID:NM_001134459Re-query CCDS DB by Protein ID:NP_001127931
Current member NCBI NM_001134459.2 NP_001127931.1 Accepted alive Link to Nucleotide Sequence:NM_001134459.2Link to Protein Sequence:NP_001127931.1Re-query CCDS DB by Nucleotide ID:NM_001134459Re-query CCDS DB by Protein ID:NP_001127931Link to BLAST:NP_001127931.1
Original member NCBI NM_001134460.2 NP_001127932.1 Updated not alive Link to Nucleotide Sequence:NM_001134460.2Link to Protein Sequence:NP_001127932.1Re-query CCDS DB by Nucleotide ID:NM_001134460Re-query CCDS DB by Protein ID:NP_001127932
Current member NCBI NM_001134460.3 NP_001127932.1 Accepted alive Link to Nucleotide Sequence:NM_001134460.3Link to Protein Sequence:NP_001127932.1Re-query CCDS DB by Nucleotide ID:NM_001134460Re-query CCDS DB by Protein ID:NP_001127932Link to BLAST:NP_001127932.1
Original member NCBI NM_001134461.1 NP_001127933.1 Updated not alive Link to Nucleotide Sequence:NM_001134461.1Link to Protein Sequence:NP_001127933.1Re-query CCDS DB by Nucleotide ID:NM_001134461Re-query CCDS DB by Protein ID:NP_001127933
Current member NCBI NM_001134461.2 NP_001127933.1 Accepted alive Link to Nucleotide Sequence:NM_001134461.2Link to Protein Sequence:NP_001127933.1Re-query CCDS DB by Nucleotide ID:NM_001134461Re-query CCDS DB by Protein ID:NP_001127933Link to BLAST:NP_001127933.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127931.1 845 Q80Y24 845 100% 0 0
NP_001127932.1 845 Q80Y24 845 100% 0 0
NP_001127933.1 845 Q80Y24 845 100% 0 0

Chromosomal Locations for CCDS 51854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 92375946 92376820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92410757 92411632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92416736 92416922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92420143 92420346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92422331 92422468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92425580 92425693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92458475 92458618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2538 nt):
ATGGTAACAGTGATGCCGCTGGAGATGGAGAAGACCATCAGCAAGCTCATGTTTGACTTCCAGAGGAGTT
CAACCTCAGATGACGACTCTGGCTGTGCTTTGGAAGAGTACGCCTGGGTCCCCCCAGGGCTGAAGCCTGA
GCAGGTGCACCAGTATTATAGCTGCCTCCCAGAAGAGAAAGTCCCCTATGTCAACAGTGCTGGAGAGAAG
TTGCGAATCAAGCAGCTACTGCACCAGCTGCCGCCCCATGACAATGAGGTTCGGTATTGCAACTCCCTGG
ACGAGGAAGAGAAGAGGGAACTGAAGCTGTTCAGCAACCAGAGGAAACGTGAGAACCTGGGCCGAGGCAA
TGTCAGGCCTTTCCCCGTCACCATGACAGGAGCTATTTGTGAACAGTGCGGAGGGCAGATTAAGGGCGGC
GACATCGCTGTGTTTGCATCACGTGCTGGCCATGGCATCTGCTGGCATCCACCCTGCTTCGTATGCACCG
TCTGCAATGAGCTTCTGGTTGACCTCATCTACTTTTACCAAGATGGGAAGATCTACTGTGGCAGGCACCA
TGCAGAGTGCCTGAAGCCACGCTGTGCAGCCTGTGATGAGATCATCTTTGCAGACGAGTGCACAGAGGCT
GAGGGACGACACTGGCACATGAGACATTTCTGCTGCTTTGAGTGTGAGACAGTGCTGGGGGGCCAGCGCT
ACATCATGAAGGAGGGAAGACCCTACTGCTGCCACTGCTTTGAGTCCCTGTATGCAGAATATTGTGATAC
CTGTGCCCAACATATAGGAATTGACCAAGGTCAAATGACCTACGACGGCCAACACTGGCATGCTACAGAG
ACCTGTTTCTGCTGTGCTCATTGTAAGAAGTCTCTTCTGGGACGGCCATTCCTCCCAAAGCAAGGCCAGA
TATTCTGCTCACGGGCCTGTAGTGCTGGGGAGGACCCCAATGGCTCTGATTCATCTGACTCCGCCTTCCA
GAACGCCAGAGCCAAGGAGTCTCGCCGCAGTGCCAAAATCGGCAAGAACAAGGGCAAGACAGAGGAAGCC
ATGCTGAACCAGCACAGCCAGCTGCAGGTGAGTTCTAACCGGCTCTCAGCTGATGTGGACCCCCTGTCAG
TGCAGATGGATCTCCTCAGTCTGTCCAGCCAGACGCCCAGCCTCAACCGGGACCCCATTTGGAGGAGCCG
GGAAGAGCCCTTTCATTATGGGAATAAGATGGAGCAGAACCAATCCCAGAGTCCTTTGCAGCTTCTCAGC
CAGTGCAACATCAGAACGTCCTACAGTCCAGGAGGGCAGGGAGCAGGAGCCCAGCCTGACATGTGGGCCA
AGCACTTCAGCAACCCTAAGAGAAGCTCATCAATGGCCCTGAAGGGGCATGGAGGCAGCTTTATCCAGGA
ATGCCGTGAGGACTATTACCCGGGGAGGCTGATGTCCCAGGAGAGCTACAGTGATATGTCCAGCCAAAGC
TTTAATGAAACCCGAGGCAGCATCCCAGTTCCCAAGTATGAGGAGGAAGAGGAGGAGGAAGAAGGTGGCA
TATCTACTCAGCAGTGCCGGCCCCGTCGTCCACTCAGTTCCCTGAAATACACAGAAGACATGACACCCAC
GGAACAGACTCCTCGTGGCTCTATGGAATCACTGGCCCTGTCAAATGCAACAGGCCTGTCTGCTGAAGGT
GGTGCCAAGCGCCAGGAGCACCTATCACGGTTTTCCATGCCTGACCTCAGCAAAGACTCTGGAATGAATG
TCTCGGAAAAGCTGAGCAACATGGGCACTCTCAACTCCTCAATGCAGTTCAGGAGCGCAGAGTCTGTCCG
CAGCCTGCTGTCCGCACAACAGTACCAGGAGATGGAGGGGAACCTTCACCAGCTCAGCAACCCCCTAGGA
TACAGGGACCTGCAGTCCCATGGAAGGATGCACCAGAGCTTTGATTTTGATGGTGGCATAGCGAGCAGCA
AGCTACCAGGACAGGAAGGTGTGCACATCCAGCCCATGAGTGAGCGCACCCGGAGGAGAACTACTTCCAG
GGATGACAACCGCCGCTTCCGCCCTCACCGGTCCAGGAGGTCCCGACGTTCTCGCTCAGACAACGCCCTG
CACCTAGCCAGCGAGCGAGAGGTCATCGCTCGGTTGAAGGAAAGGCCCCCTCTGAGAGCCAGGGAGGACT
ATGACCAGTTCATGCGCCAACGCAGCTTCCAGGAGAGCCTGGGGCAGGGTTCCCGGCGGGATCTGTACAG
CCAGTGTCCCAGGACTGTGTCGGACCTGGCTTTGCAGAATGCCTTTGGGGAACGATGGGGACCCTACTTC
ACGGAGTATGATTGGTGCTCCACCTGCTCCTCCTCTTCTGAGTCCGACAACGAGGGCTACTTCCTAGGAG
AACCCATCCCGCAGCCAGCCCGCCTACGATATGTCACAAGTGATGAGCTCCTGCACAAATACAGCTCTTA
CGGTGTCCCCAAATCCTCCACCTTAGGTGGCAGAGGACAGTTGCATAGCAGGAAAAGACAGAAGAGCAAA
AACTGTATCATTTCGTAA

Translation (845 aa):
MVTVMPLEMEKTISKLMFDFQRSSTSDDDSGCALEEYAWVPPGLKPEQVHQYYSCLPEEKVPYVNSAGEK
LRIKQLLHQLPPHDNEVRYCNSLDEEEKRELKLFSNQRKRENLGRGNVRPFPVTMTGAICEQCGGQIKGG
DIAVFASRAGHGICWHPPCFVCTVCNELLVDLIYFYQDGKIYCGRHHAECLKPRCAACDEIIFADECTEA
EGRHWHMRHFCCFECETVLGGQRYIMKEGRPYCCHCFESLYAEYCDTCAQHIGIDQGQMTYDGQHWHATE
TCFCCAHCKKSLLGRPFLPKQGQIFCSRACSAGEDPNGSDSSDSAFQNARAKESRRSAKIGKNKGKTEEA
MLNQHSQLQVSSNRLSADVDPLSVQMDLLSLSSQTPSLNRDPIWRSREEPFHYGNKMEQNQSQSPLQLLS
QCNIRTSYSPGGQGAGAQPDMWAKHFSNPKRSSSMALKGHGGSFIQECREDYYPGRLMSQESYSDMSSQS
FNETRGSIPVPKYEEEEEEEEGGISTQQCRPRRPLSSLKYTEDMTPTEQTPRGSMESLALSNATGLSAEG
GAKRQEHLSRFSMPDLSKDSGMNVSEKLSNMGTLNSSMQFRSAESVRSLLSAQQYQEMEGNLHQLSNPLG
YRDLQSHGRMHQSFDFDGGIASSKLPGQEGVHIQPMSERTRRRTTSRDDNRRFRPHRSRRSRRSRSDNAL
HLASEREVIARLKERPPLRAREDYDQFMRQRSFQESLGQGSRRDLYSQCPRTVSDLALQNAFGERWGPYF
TEYDWCSTCSSSSESDNEGYFLGEPIPQPARLRYVTSDELLHKYSSYGVPKSSTLGGRGQLHSRKRQKSK
NCIIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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