NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51513.1 Public Mus musculus 5 Corin 23 108 98 CCDS HistoryNCBI Gene:53419Re-query CCDS DB by CCDS ID:51513.1Re-query CCDS DB by GeneID:53419See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51513.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167460.8 ENSMUSP00000127389.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167460.8Link to Ensembl Protein Viewer:ENSMUSP00000127389.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167460Re-query CCDS DB by Protein ID:ENSMUSP00000127389
Original member NCBI NM_001122756.1 NP_001116228.1 Updated not alive Link to Nucleotide Sequence:NM_001122756.1Link to Protein Sequence:NP_001116228.1Re-query CCDS DB by Nucleotide ID:NM_001122756Re-query CCDS DB by Protein ID:NP_001116228
Current member NCBI NM_001122756.2 NP_001116228.1 Accepted alive Link to Nucleotide Sequence:NM_001122756.2Link to Protein Sequence:NP_001116228.1Re-query CCDS DB by Nucleotide ID:NM_001122756Re-query CCDS DB by Protein ID:NP_001116228Link to BLAST:NP_001116228.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116228.1 1047 Q9Z319-2 1047 100% 0 0

Chromosomal Locations for CCDS 51513.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72301486 72301680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72302791 72302924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72304875 72305146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72316024 72316198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72316342 72316391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72319522 72319635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72329612 72329741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72330811 72330921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72332668 72332781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72338961 72339068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72339841 72339986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72342886 72343117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72353870 72353977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72356876 72356992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72358374 72358484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72360651 72360758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72372098 72372211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72422025 72422209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72435235 72435442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72454306 72454506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72471849 72471990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72504371 72504439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3144 nt):
ATGTTCACGAAACGGCCCCCCGCCCTTGCTCCGGAGGAGTACAGCCGCCGAGCTGACGCCCCAAAGAGGG
TCTTGAGAGCAGACAGGAGCGTGGGCGAGGGCTGTCCTCAGAAGCTGGTGACTGCTAACTTGCTGCGCTT
CCTCCTGCTGGTGCTCATCCCCTGCATCTGCGCCCTCATCGTGCTGCTGGCCATCCTGCTGTCCTTTGTG
GGAACATTAAAAAGGGTTTATTTCAAATCAAATGACAGTGAACCTTTGGTCACTGATGGGGAAGCTCGAG
TGCCTGGTGTTATTCCTGTAAATACAGTTTATTATGAGAACACAGGGGCGCCCTCTCTGCCCCCCAGCCA
GTCCACTCCAGCCTGGACACCGAGAGCTCCTTCTCCAGAGGACCAGAGTCACAGGAACACAAGCACCTGC
ATGAACATCACTCACAGCCAGTGTCAAATTCTGCCCTACCACAGCACGTTGGCACCTCTCTTGCCAATTG
TCAAAAACATGGACATGGAGAAGTTCCTCAAGTTCTTCACGTACCTCCATCGCCTCAGTTGCTATCAACA
TATCCTGCTCTTCGGCTGTAGCCTCGCCTTCCCTGAGTGCGTTGTTGATGGCGATGACAGGCATGGTCTT
CTACCCTGTAGATCTTTCTGTGAGGCTGCAAAAGAAGGATGCGAATCTGTCCTGGGAATGGTGAACTCCT
CCTGGCCGGATTCCCTCAGATGCTCTCAGTTTAGGGACCACACTGAGACTAACAGCAGTGTCAGAAAGAG
CTGCTTCTCACTGCAGCAGGAACATGGAAAGCAATCACTCTGTGGAGGGGGCGAGAGCTTCCTGTGTACC
AGCGGGCTCTGCGTCCCCAAGAAGCTGCAGTGTAACGGCTATAATGACTGTGATGACTGGAGCGACGAGG
CGCATTGCAACTGCAGCAAGGATCTGTTTCACTGTGGCACAGGCAAGTGCCTCCATTACAGCCTCTTGTG
TGATGGGTACGATGACTGTGGGGACCTGAGTGACGAGCAAAACTGTGATTGTAATCTCACAAAAGAGCAT
CGCTGTGGAGATGGGCGCTGCATTGCGGCTGAGTGGGTGTGCGATGGGGACCATGACTGTGTGGACAAGT
CTGATGAGGTCAACTGCTCTTGTCACAGCCAGGGCCTGGTGGAATGCAGAAGTGGACAGTGCATCCCTAG
CACCTTCCAGTGTGATGGGGACGAAGACTGTAAGGATGGGAGTGACGAGGAGAACTGCAGTGACAGTCAG
ACGCCATGTCCAGAAGGAGAACAGGGATGCCTTGGCAGTTCCTGCGTCGAATCCTGTGCTGGTAGCTCTC
TGTGTGACTCAGACAGCAGCCTGAGTAACTGCAGTCAATGTGAGCCCATCACTTTGGAACTCTGCATGAA
TTTGCCCTACAACCATACACATTATCCAAATTACCTTGGCCACAGAACTCAAAAGGAAGCGTCCATCAGC
TGGGAGTCATCCCTTTTCCCTGCCCTTGTACAAACCAACTGTTACAAATACCTCATGTTTTTCGCTTGCA
CCATTTTGGTTCCAAAGTGTGATGTGAATACAGGACAACGCATCCCGCCTTGCAGACTCCTGTGTGAGCA
CTCCAAAGAGCGCTGTGAGTCTGTTCTGGGAATCGTTGGCCTGCAGTGGCCTGAAGACACCGACTGCAAT
CAATTTCCAGAGGAAAGTTCAGACAATCAAACTTGCCTCCTGCCCAATGAAGATGTGGAAGAATGCTCTC
CGAGTCACTTCAAATGCCGCTCGGGACGATGCGTTCTGGGCTCCAGGAGATGTGACGGCCAGGCTGACTG
TGACGACGACAGTGACGAGGAGAACTGTGGTTGTAAAGAGAGAGCTCTTTGGGAATGTCCATTTAATAAG
CAATGTCTGAAGCATACATTAATCTGCGATGGGTTTCCAGATTGTCCAGACAGTATGGATGAAAAAAACT
GCTCATTTTGCCAAGACAATGAGCTGGAATGTGCCAACCATGAGTGTGTGCCGCGTGACCTTTGGTGCGA
CGGATGGGTCGACTGCTCAGACAGTTCTGATGAATGGGGCTGTGTGACCCTCTCTAAAAATGGGAACTCC
TCCTCATTGCTGACTGTTCACAAATCTGCAAAGGAACACCACGTGTGTGCTGACGGCTGGCGGGAGACGT
TGAGTCAGCTGGCCTGCAAGCAGATGGGTTTAGGAGAACCGTCTGTGACCAAGCTGATCCCAGGACAGGA
AGGCCAGCAGTGGCTGAGGTTGTACCCCAACTGGGAGAATCTCAATGGGAGCACCTTGCAGGAGCTGCTG
GTATACAGGCACTCCTGCCCAAGCAGAAGTGAGATTTCCCTTCTGTGCTCCAAGCAAGACTGTGGCCGCC
GCCCTGCTGCCCGAATGAACAAGAGGATCCTTGGGGGTCGGACTAGTCGTCCTGGGAGGTGGCCGTGGCA
GTGCTCTCTGCAGAGTGAACCCAGTGGACATATCTGTGGCTGTGTCCTCATTGCCAAGAAGTGGGTCCTG
ACAGTTGCCCATTGCTTTGAAGGGAGAGAAGACGCTGATGTTTGGAAAGTGGTATTTGGCATAAACAACC
TGGACCATCCATCAGGCTTCATGCAGACCCGCTTTGTGAAGACCATCCTGCTACATCCCCGTTACAGTCG
AGCAGTGGTAGACTATGATATCAGCGTGGTGGAGCTGAGCGATGATATCAATGAGACAAGCTACGTCAGA
CCTGTCTGCCTACCCAGTCCGGAGGAGTATCTAGAACCAGATACGTACTGCTACATCACAGGCTGGGGCC
ACATGGGCAATAAAATGCCCTTTAAGCTGCAGGAGGGAGAGGTCCGCATTATCCCTCTGGAGCAGTGCCA
GTCCTATTTTGACATGAAGACCATCACCAATCGGATGATCTGTGCTGGCTATGAGTCTGGCACCGTGGAC
TCCTGCATGGGAGACAGCGGTGGGCCTCTGGTTTGTGAACGACCCGGAGGACAGTGGACATTATTTGGTT
TAACTTCATGGGGCTCCGTCTGCTTTTCCAAAGTTCTGGGACCTGGAGTGTACAGCAATGTGTCTTACTT
TGTGGGCTGGATTGAAAGACAAATATATATCCAGACCTTTCTCCAAAAGAAATCCCAAGGATAA

Translation (1047 aa):
MFTKRPPALAPEEYSRRADAPKRVLRADRSVGEGCPQKLVTANLLRFLLLVLIPCICALIVLLAILLSFV
GTLKRVYFKSNDSEPLVTDGEARVPGVIPVNTVYYENTGAPSLPPSQSTPAWTPRAPSPEDQSHRNTSTC
MNITHSQCQILPYHSTLAPLLPIVKNMDMEKFLKFFTYLHRLSCYQHILLFGCSLAFPECVVDGDDRHGL
LPCRSFCEAAKEGCESVLGMVNSSWPDSLRCSQFRDHTETNSSVRKSCFSLQQEHGKQSLCGGGESFLCT
SGLCVPKKLQCNGYNDCDDWSDEAHCNCSKDLFHCGTGKCLHYSLLCDGYDDCGDLSDEQNCDCNLTKEH
RCGDGRCIAAEWVCDGDHDCVDKSDEVNCSCHSQGLVECRSGQCIPSTFQCDGDEDCKDGSDEENCSDSQ
TPCPEGEQGCLGSSCVESCAGSSLCDSDSSLSNCSQCEPITLELCMNLPYNHTHYPNYLGHRTQKEASIS
WESSLFPALVQTNCYKYLMFFACTILVPKCDVNTGQRIPPCRLLCEHSKERCESVLGIVGLQWPEDTDCN
QFPEESSDNQTCLLPNEDVEECSPSHFKCRSGRCVLGSRRCDGQADCDDDSDEENCGCKERALWECPFNK
QCLKHTLICDGFPDCPDSMDEKNCSFCQDNELECANHECVPRDLWCDGWVDCSDSSDEWGCVTLSKNGNS
SSLLTVHKSAKEHHVCADGWRETLSQLACKQMGLGEPSVTKLIPGQEGQQWLRLYPNWENLNGSTLQELL
VYRHSCPSRSEISLLCSKQDCGRRPAARMNKRILGGRTSRPGRWPWQCSLQSEPSGHICGCVLIAKKWVL
TVAHCFEGREDADVWKVVFGINNLDHPSGFMQTRFVKTILLHPRYSRAVVDYDISVVELSDDINETSYVR
PVCLPSPEEYLEPDTYCYITGWGHMGNKMPFKLQEGEVRIIPLEQCQSYFDMKTITNRMICAGYESGTVD
SCMGDSGGPLVCERPGGQWTLFGLTSWGSVCFSKVLGPGVYSNVSYFVGWIERQIYIQTFLQKKSQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH