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Report for CCDS51069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51069.1 Public Mus musculus 3 Cyp2u1 23 108 98 CCDS HistoryNCBI Gene:71519Re-query CCDS DB by CCDS ID:51069.1Re-query CCDS DB by GeneID:71519See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106337.6 ENSMUSP00000101944.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106337.6Link to Ensembl Protein Viewer:ENSMUSP00000101944.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106337Re-query CCDS DB by Protein ID:ENSMUSP00000101944
Original member Current member NCBI NM_027816.3 NP_082092.2 Accepted alive Link to Nucleotide Sequence:NM_027816.3Link to Protein Sequence:NP_082092.2Re-query CCDS DB by Nucleotide ID:NM_027816Re-query CCDS DB by Protein ID:NP_082092Link to BLAST:NP_082092.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082092.2 530 Q9CX98-1 530 100% 0 0

Chromosomal Locations for CCDS 51069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 131291129 131291307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131293517 131293684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131295388 131295549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131297786 131298421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131302680 131303127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGTCCTCGCTCGGGGACCAGCGTCCCGCGGCAGGGGAGCAGCCGGGAGCTAGACTGCACGTGCGGGCGA
CAGGAGGCGCGCTGCTACTTTGCCTGCTGGCGGTGCTGCTAGGCTGGGTTTGGCTGCGGCGGCAACGCGC
CTGCGGCATCCCTCCGGGGCCCAAGCCTCGGCCACTCGTGGGTAACTTCGGGCACTTGCTGGTGCCGCGC
TTTCTACGACCGCAGTTCTGGCTGGGCTCGGGCAGCCAGACGGACACGGTGGGCCAGCATGTGTACCTGG
CCAGGATGGCCCGTGTCTATGGCAACATCTTCAGCTTCTTCATCGGCCACCGTCTGGTGGTGGTCCTCAG
CGACTTCCACAGCGTGCGCGAGGCGCTAGTGCAGCAGGCTGAAGTGTTCAGTGACCGCCCGCGGATGCCG
CTCATCTCCATCATGACCAAGGAGAAGGGAATCGTGTTTGCACACTATGGTCCAATTTGGAAACAGCAGA
GGAGATTCTCCCACTCGACGCTTCGTCATTTCGGTCTGGGCAAGCTCAGCCTGGAGCCCAGGATCATCGA
GGAGTTTGCATACGTGAAAGAAGCCATGCAGAAGCACGGGGAGGCCCCCTTCAGCCCCTTCCCAATCATC
AGCAATGCCGTCTCCAACATCATCTGCTCCCTGTGCTTCGGCCAGCGCTTCGATTACACCAACAAGGAGT
TTAAAAAGGTGTTGGATTTCATGTCCCGGGGGTTGGAAATCTGCCTGCACAGCCAGCTCTTCCTGATCAA
CATATGCCCCTGGTTTTACTACCTCCCCTTTGGTCCATTTAAGGAGCTAAGGCAAATCGAAAGGGACATA
TCCTGCTTCCTGAAAAACATCATCCGAGAGCATCAAGAGTCTCTGGATGCCAGCAACCCTCAGGACTTCA
TAGACATGTACCTTCTGCACATGGAGGAAGAGCAGGGAGCCAGCAGGCGCAGCAGCTTCGACGAGGACTA
CCTGTTCTACATCATTGGGGACCTCTTCATCGCCGGCACTGACACCACGACCAACTCTCTGCTCTGGTGC
CTGCTGTACATGTCACTGAACCCCGACGTGCAAAAAAAGGTTCATGAAGAAATTGAAAGGGTCATTGGCT
GTGACCGTGCACCTTCCCTCACGGACAAGGCCCAGATGCCATACACAGAGGCCACCATCATGGAGGTGCA
GCGGCTGTCCATGGTGGTGCCGCTCGCCATTCCTCACATGACCTCGGAGAAAACAGTCCTCCAAGGGTTC
ACCATTCCCAAAGGCACAGTGGTCCTAATCAACCTGTGGTCAGTACACAGAGACCCAGCCATCTGGGAGA
AGCCAGACGACTTCTGTCCTCATCGATTTCTGGATGACCAAGGACAACTTTTGAAAAGAGAAACTTTTAT
TCCTTTTGGGATAGGGAAGCGGGTGTGTATGGGAGAGCAGCTGGCCAAGATGGAGTTATTCCTGATGTTC
GTGAGCCTGATGCAGACTTTCACCTTTGCGTTACCTGAGGGTTCCGAGAAGCCTGTCATGACTGGGAGAT
TTGGTCTAACACTGGCCCCGCACCCTTTTAATGTAACCATCTCAAAGAGATGA

Translation (530 aa):
MSSLGDQRPAAGEQPGARLHVRATGGALLLCLLAVLLGWVWLRRQRACGIPPGPKPRPLVGNFGHLLVPR
FLRPQFWLGSGSQTDTVGQHVYLARMARVYGNIFSFFIGHRLVVVLSDFHSVREALVQQAEVFSDRPRMP
LISIMTKEKGIVFAHYGPIWKQQRRFSHSTLRHFGLGKLSLEPRIIEEFAYVKEAMQKHGEAPFSPFPII
SNAVSNIICSLCFGQRFDYTNKEFKKVLDFMSRGLEICLHSQLFLINICPWFYYLPFGPFKELRQIERDI
SCFLKNIIREHQESLDASNPQDFIDMYLLHMEEEQGASRRSSFDEDYLFYIIGDLFIAGTDTTTNSLLWC
LLYMSLNPDVQKKVHEEIERVIGCDRAPSLTDKAQMPYTEATIMEVQRLSMVVPLAIPHMTSEKTVLQGF
TIPKGTVVLINLWSVHRDPAIWEKPDDFCPHRFLDDQGQLLKRETFIPFGIGKRVCMGEQLAKMELFLMF
VSLMQTFTFALPEGSEKPVMTGRFGLTLAPHPFNVTISKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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