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Report for CCDS5080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5080.1 Public Homo sapiens 6 WASF1 24 110 108 CCDS HistoryNCBI Gene:8936Re-query CCDS DB by CCDS ID:5080.1Re-query CCDS DB by GeneID:8936See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5080.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359451.6 ENSP00000352425.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359451.6Link to Ensembl Protein Viewer:ENSP00000352425.2Re-query CCDS DB by Nucleotide ID:ENST00000359451Re-query CCDS DB by Protein ID:ENSP00000352425
Original member Current member EBI ENST00000392586.5 ENSP00000376365.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392586.5Link to Ensembl Protein Viewer:ENSP00000376365.1Re-query CCDS DB by Nucleotide ID:ENST00000392586Re-query CCDS DB by Protein ID:ENSP00000376365
Original member Current member EBI ENST00000392587.6 ENSP00000376366.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392587.6Link to Ensembl Protein Viewer:ENSP00000376366.2Re-query CCDS DB by Nucleotide ID:ENST00000392587Re-query CCDS DB by Protein ID:ENSP00000376366
Original member Current member EBI ENST00000392588.5 ENSP00000376367.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392588.5Link to Ensembl Protein Viewer:ENSP00000376367.1Re-query CCDS DB by Nucleotide ID:ENST00000392588Re-query CCDS DB by Protein ID:ENSP00000376367
Original member Current member EBI ENST00000392589.6 ENSP00000376368.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392589.6Link to Ensembl Protein Viewer:ENSP00000376368.1Re-query CCDS DB by Nucleotide ID:ENST00000392589Re-query CCDS DB by Protein ID:ENSP00000376368
Original member Current member NCBI NM_001024934.2 NP_001020105.1 Accepted alive Link to Nucleotide Sequence:NM_001024934.2Link to Protein Sequence:NP_001020105.1Re-query CCDS DB by Nucleotide ID:NM_001024934Re-query CCDS DB by Protein ID:NP_001020105Link to BLAST:NP_001020105.1
Original member Current member NCBI NM_001024935.2 NP_001020106.1 Accepted alive Link to Nucleotide Sequence:NM_001024935.2Link to Protein Sequence:NP_001020106.1Re-query CCDS DB by Nucleotide ID:NM_001024935Re-query CCDS DB by Protein ID:NP_001020106Link to BLAST:NP_001020106.1
Original member Current member NCBI NM_001024936.2 NP_001020107.1 Accepted alive Link to Nucleotide Sequence:NM_001024936.2Link to Protein Sequence:NP_001020107.1Re-query CCDS DB by Nucleotide ID:NM_001024936Re-query CCDS DB by Protein ID:NP_001020107Link to BLAST:NP_001020107.1
Original member Current member NCBI NM_003931.3 NP_003922.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003931.3Link to Protein Sequence:NP_003922.1Re-query CCDS DB by Nucleotide ID:NM_003931Re-query CCDS DB by Protein ID:NP_003922Link to BLAST:NP_003922.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020105.1 559 Q92558 559 100% 0 0
NP_001020106.1 559 Q92558 559 100% 0 0
NP_001020107.1 559 Q92558 559 100% 0 0
NP_003922.1 559 Q92558 559 100% 0 0

Chromosomal Locations for CCDS 5080.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 110100522 110100679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110101588 110102216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110103378 110103557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110105407 110105579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110107077 110107194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110108528 110108681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110113326 110113460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110127469 110127601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGCCGCTAGTGAAAAGAAACATCGATCCTAGGCACTTGTGCCACACAGCACTGCCTAGAGGCATTAAGA
AT
GAACTGGAATGTGTAACCAATATTTCCTTGGCAAATATAATTAGACAACTAAGTAGCCTAAGTAAATA
T
GCTGAAGATATATTTGGAGAATTATTCAATGAAGCACATAGTTTTTCCTTCAGAGTCAACTCATTGCAA
GAA
CGTGTGGACCGTTTATCTGTTAGTGTTACACAGCTTGATCCAAAGGAAGAAGAATTGTCTTTGCAAG
AT
ATAACAATGAGGAAAGCTTTCCGAAGTTCTACAATTCAAGACCAGCAGCTTTTCGATCGCAAGACTTT
G
CCTATTCCATTACAGGAGACGTACGATGTTTGTGAACAGCCTCCACCTCTCAATATACTCACTCCTTAT
AG
A
GATGATGGTAAAGAAGGTCTGAAGTTTTATACCAATCCTTCGTATTTCTTTGATCTATGGAAAGAAA
AA
ATGTTGCAAGATACAGAGGATAAGAGGAAGGAAAAGAGGAAGCAGAAGCAGAAAAATCTAGATCGTCC
T
CATGAACCAGAAAAAGTGCCAAGAGCACCTCATGACAGGCGGCGAGAATGGCAGAAGCTGGCCCAAGGT
CCA
GAGCTGGCTGAAGATGATGCTAATCTCTTACATAAGCATATTGAAGTTGCTAATGGCCCAGCCTCTC
AT
TTTGAAACAAGACCTCAGACATACGTGGATCATATGGATGGATCTTACTCACTTTCTGCCTTGCCATT
T
AGTCAGATGAGTGAGCTTCTGACTAGAGCTGAGGAAAGGGTATTAGTCAGACCACATGAACCACCTCCA
CCT
CCACCAATGCATGGAGCAGGAGATGCAAAACCGATACCCACCTGTATCAGTTCTGCTACAGGTTTGA
TA
GAAAATCGCCCTCAGTCACCAGCTACAGGCAGAACACCTGTGTTTGTGAGCCCCACTCCCCCACCTCC
T
CCACCACCTCTTCCATCTGCCTTGTCAACTTCCTCATTAAGAGCTTCAATGACTTCAACTCCTCCCCCT
CCA
GTACCTCCCCCACCTCCACCTCCAGCCACTGCTTTGCAAGCTCCAGCAGTACCACCACCTCCAGCTC
CT
CTTCAGATTGCCCCTGGAGTTCTTCACCCAGCTCCTCCTCCAATTGCACCTCCTCTAGTACAGCCCTC
T
CCACCAGTAGCTAGAGCTGCCCCAGTATGTGAGACTGTACCAGTTCATCCACTCCCACAAGGTGAAGTT
CAG
GGGCTGCCTCCACCCCCACCACCGCCTCCTCTGCCTCCACCTGGCATTCGACCATCATCACCTGTCA
CA
GTTACAGCTCTTGCTCATCCTCCCTCTGGGCTACATCCAACTCCATCTACTGCCCCAGGTCCCCATGT
T
CCATTAATGCCTCCATCTCCTCCATCACAAGTTATACCTGCTTCTGAGCCAAAGCGCCATCCATCAACC
CTA
CCTGTAATCAGTGATGCCAGGAGTGTGCTACTGGAAGCAATACGAAAAGGTATTCAGCTACGCAAAG
TA
GAAGAGCAGCGTGAACAGGAAGCTAAGCATGAACGCATTGAAAACGATGTTGCCACCATCCTGTCTCG
C
CGTATTGCTGTTGAATATAGTGATTCGGAAGATGATTCAGAATTTGATGAAGTAGATTGGTTGGAGTAA


Translation (559 aa):
MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQ
E
RVDRLSVSVTQLDPKEEE
LSLQDITMRKAFRSSTIQDQQLFDRKTLPIPLQETYDVCEQPPPLNILTPY
R
DDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQKQKNLDRPHEPEKVPRAPHDRRREWQKLAQG
P
ELAEDDANLLHKHIEVANGPASHFET
RPQTYVDHMDGSYSLSALPFSQMSELLTRAEERVLVRPHEPPP
P
PPMHGAGDAKPIPTCI
SSATGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPP
P
VPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEV
Q
GLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEPKRHPST
L
PVISDARSVLLEAIRK
GIQLRKVEEQREQEAKHERIENDVATILSRRIAVEYSDSEDDSEFDEVDWLE



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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