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Report for CCDS50624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50624.1 Public Mus musculus 2 Slc43a1 23 108 98 CCDS HistoryNCBI Gene:72401Re-query CCDS DB by CCDS ID:50624.1Re-query CCDS DB by GeneID:72401See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50624.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028469.13 ENSMUSP00000028469.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028469.13Link to Ensembl Protein Viewer:ENSMUSP00000028469.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028469Re-query CCDS DB by Protein ID:ENSMUSP00000028469
Original member Current member NCBI NM_001081349.2 NP_001074818.2 Accepted alive Link to Nucleotide Sequence:NM_001081349.2Link to Protein Sequence:NP_001074818.2Re-query CCDS DB by Nucleotide ID:NM_001081349Re-query CCDS DB by Protein ID:NP_001074818Link to BLAST:NP_001074818.2

Chromosomal Locations for CCDS 50624.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84839566 84839681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84840839 84841005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84849666 84849843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84849952 84850007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84850116 84850192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84852668 84852760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84854412 84854545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84855471 84855649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84856757 84856903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84857061 84857096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84857284 84857437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84859689 84859830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84860090 84860163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84861376 84861499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84862883 84863029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1824 nt):
ATGCGATTTGGAATTGGGATCCTGGGTCTCAGGAGATCCGGAGTGTGGAAGCGCCGGGGAGACTCTGTGT
TACTCCGGGTGTCAACAGCTGCGGGAGGCAAGTTTGTCGGGGACAGAGTCTCGGCCACCATGGCTCCCAC
GCTGAAGCAGGCGTACCGCAGGCGCTGGTGGATGGCTTGCACCGCTGTGGTGGAGAACCTCTTCTTCTCC
GCGGTGCTCCTGGGCTGGGCCTCCCTGCTGATCATGCTCAAGAAGGAAGGCTTCTATTCCAGCCTGTGCC
CAGCTGAGAACAGGACCAATACCACCCAAGATGAACAGCATCAGTGGACAAGCTGTGACCAGCAGGAAAA
GATGCTCAACCTGGGTTTCACCATTGGCTCCTTCCTGCTGAGTGCTACCACACTGCCTCTGGGAATTCTC
ATGGACCGCTTTGGGCCCAGGCCTCTTCGACTGGTGGGCAGTGCCTGCTTTGCCGCATCCTGCACTCTAA
TGGCCTTGGCCTCCAGGGACACTGAAGTTTTGTCTCCATTGATATTCCTGGCACTGTCCTTGAATGGATT
TGCTGGCATCTGCTTAACGTTTACCTCACTCACGCTGCCCAACATGTTTGGGAATTTGCGATCCACTTTC
ATGGCCCTCATGATTGGCTCCTATGCGTCTTCTGCCATCACGTTCCCTGGAATCAAGCTGATCTACGATG
CCGGAGTCCCCTTCACTGTCATCATGTTCACATGGTCTGGCCTGGCCTGTCTCATCTTTTTGAACTGTGC
TCTCAACTGGCCTGCAGAAGCCTTTCCTGCCCCTGAGGAAGTTGACTACACGAAGAAGATCAAACTCATT
GGGTTAGCCTTGGACCACAAGGTCACAGGTGACCGCTTCTACACCCATGTAACCATTGTGGGTCAGCGGC
TGAGTCAGAAGTCCCCCAGCCTGGAGGAGGGCGCTGACGCCTTTATTTCATCCCCGGATATCCCTGGTAC
CTCAGAGGAGACTCCTGAAAAGTCTGTCCCTTTTCGCAAGAGCCTCTGCTCCCCCATTTTCCTGTGGAGC
CTTGTCACCATGGGCATGACCCAGCTTCGGGTCATCTTCTATATGGGTGCTATGAACAAGATCCTGGAGT
TCATTGTGACTGGTGGCAAGGAACGTGAGACAAATGAGCAGAGACAGAAGGTGGAGGAGACAGTTGAGTT
CTACTCTTCCATCTTTGGAGTCATGCAGCTGTTGTGTCTTCTCACCTGCCCCCTCATTGGCTACATCATG
GACTGGCGCATCAAGGACTGTGTGGATGCTCCAACGGAGGGCACCCTGAATGAGAATGCTTCCTTTGGAG
ATGCCAGAGATGGGGCTAGCACCAAGTTCACTAGACCACGCTACCGCAAGGTACAAAAGCTCACCAATGC
CATCAATGCCTTCACCCTGACCAACATCCTGCTTGTGGGTTTCGGCATCGCCTGCCTCATCAAGAACTTA
CACCTGCAGTTGCTGGCCTTTGTCCTGCATACCATAGTTCGCGGTTTCTTCCACTCAGCCTGTGGAGGTC
TCTACGCTGCTGTGTTCCCGTCCAATCATTTTGGGACACTGACAGGTCTTCAGTCTCTCATCAGTGCCGT
GTTTGCTCTGCTGCAACAGCTACTCTTCATGGCCATGGTGGGACCCCTGCATGGAGATCCCTTCTGGGTG
AACCTGGGCCTCCTACTTCTCTCGTTCCTGGGATTTCTCCTACCTTCCTACCTCTACTACTACCGGTCTC
GCCTGCAGAGAGAGTATGCCACCAATTTGGTAGACCCACAGAAGGTGCTCAATACTTCGAAGGTGGCTAC
ATAG

Translation (607 aa):
MRFGIGILGLRRSGVWKRRGDSVLLRVSTAAGGKFVGDRVSATMAPTLKQAYRRRWWMACTAVVENLFFS
AVLLGWASLLIMLKKEGFYSSLCPAENRTNTTQDEQHQWTSCDQQEKMLNLGFTIGSFLLSATTLPLGIL
MDRFGPRPLRLVGSACFAASCTLMALASRDTEVLSPLIFLALSLNGFAGICLTFTSLTLPNMFGNLRSTF
MALMIGSYASSAITFPGIKLIYDAGVPFTVIMFTWSGLACLIFLNCALNWPAEAFPAPEEVDYTKKIKLI
GLALDHKVTGDRFYTHVTIVGQRLSQKSPSLEEGADAFISSPDIPGTSEETPEKSVPFRKSLCSPIFLWS
LVTMGMTQLRVIFYMGAMNKILEFIVTGGKERETNEQRQKVEETVEFYSSIFGVMQLLCLLTCPLIGYIM
DWRIKDCVDAPTEGTLNENASFGDARDGASTKFTRPRYRKVQKLTNAINAFTLTNILLVGFGIACLIKNL
HLQLLAFVLHTIVRGFFHSACGGLYAAVFPSNHFGTLTGLQSLISAVFALLQQLLFMAMVGPLHGDPFWV
NLGLLLLSFLGFLLPSYLYYYRSRLQREYATNLVDPQKVLNTSKVAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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