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Report for CCDS506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
506.1 Public Homo sapiens 1 B4GALT2 24 110 108 CCDS HistoryNCBI Gene:8704Re-query CCDS DB by CCDS ID:506.1Re-query CCDS DB by GeneID:8704See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 506.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356836.10 ENSP00000349293.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356836.10Link to Ensembl Protein Viewer:ENSP00000349293.6Re-query CCDS DB by Nucleotide ID:ENST00000356836Re-query CCDS DB by Protein ID:ENSP00000349293
Original member Current member EBI ENST00000372324.6 ENSP00000361399.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372324.6Link to Ensembl Protein Viewer:ENSP00000361399.1Re-query CCDS DB by Nucleotide ID:ENST00000372324Re-query CCDS DB by Protein ID:ENSP00000361399
Original member Current member EBI ENST00000434555.7 ENSP00000407468.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434555.7Link to Ensembl Protein Viewer:ENSP00000407468.3Re-query CCDS DB by Nucleotide ID:ENST00000434555Re-query CCDS DB by Protein ID:ENSP00000407468
Original member Current member NCBI NM_001005417.2 NP_001005417.1 Accepted alive Link to Nucleotide Sequence:NM_001005417.2Link to Protein Sequence:NP_001005417.1Re-query CCDS DB by Nucleotide ID:NM_001005417Re-query CCDS DB by Protein ID:NP_001005417Link to BLAST:NP_001005417.1
Original member Current member NCBI NM_003780.5 NP_003771.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003780.5Link to Protein Sequence:NP_003771.1Re-query CCDS DB by Nucleotide ID:NM_003780Re-query CCDS DB by Protein ID:NP_003771Link to BLAST:NP_003771.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005417.1 372 O60909-1 372 100% 0 0
NP_003771.1 372 O60909-1 372 100% 0 0

Chromosomal Locations for CCDS 506.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 43981161 43981473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43981689 43981924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43984865 43985055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43985278 43985400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43985517 43985621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43990298 43990448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGAGCAGACTGCTGGGGGGGACGCTGGAGCGCGTCTGCAAGGCTGTGCTCCTTCTCTGCCTGCTGCACT
TCCTCGTGGCCGTCATCCTCTACTTTGACGTCTACGCCCAGCACCTGGCCTTCTTCAGCCGCTTCAGTGC
CCGAGGCCCTGCCCATGCCCTCCACCCAGCTGCTAGCAGCAGCAGCAGCAGCAGCAACTGCTCCCGGCCC
AACGCCACCGCCTCTAGCTCCGGGCTCCCTGAGGTCCCCAGTGCCCTGCCCGGTCCCACGGCTCCCACGC
TGCCACCCTGTCCTGACTCGCCACCTGGTCTTGTGGGCAGACTGCTGATCGAGTTCACCTCACCCATGCC
CCTGGAGCGGGTGCAGAGGGAGAACCCAGGCGTGCTCATGGGCGGCCGATACACACCGCCCGACTGCACC
CCAGCCCAGACGGTGGCGGTCATCATCCCCTTTAGACACCGGGAACACCACCTGCGCTACTGGCTCCACT
ATCTACACCCCATCTTGAGGCGGCAGCGGCTGCGCTACGGCGTCTATGTCATCAACCAGCATGGTGAGGA
CACCTTCAACCGGGCCAAGCTGCTTAACGTGGGCTTCCTAGAGGCGCTGAAGGAGGATGCCGCCTATGAC
TGCTTCATCTTCAGCGATGTGGACCTGGTCCCCATGGATGACCGCAACCTATACCGCTGCGGCGACCAAC
CCCGCCACTTTGCCATTGCCATGGACAAGTTTGGCTTCCGGCTTCCCTATGCTGGCTACTTTGGAGGTGT
GTCAGGCCTGAGTAAGGCTCAGTTTCTGAGAATCAATGGCTTCCCCAATGAGTACTGGGGCTGGGGTGGC
GAGGATGATGACATCTTCAACCGGATCTCCCTGACTGGGATGAAGATCTCACGCCCAGACATCCGAATCG
GCCGCTACCGCATGATCAAGCACGACCGCGACAAGCATAACGAACCTAACCCTCAGAGGTTTACCAAGAT
TCAAAACACGAAGCTGACCATGAAGCGGGACGGCATTGGGTCAGTGCGGTACCAGGTCTTGGAGGTGTCT
CGGCAACCACTCTTCACCAATATCACAGTGGACATTGGGCGGCCTCCGTCGTGGCCCCCTCGGGGCTGA

Translation (372 aa):
MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSARGPAHALHPAASSSSSSSNCSRP
NATASSSGLPEVPSALPGPTAPTLPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCT
PAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYD
CFIFSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPNEYWGWGG
EDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVS
RQPLFTNITVDIGRPPSWPPRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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