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Report for CCDS50511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50511.1 Public Mus musculus 2 Etl4 23 108 98 CCDS HistoryNCBI Gene:208618Re-query CCDS DB by CCDS ID:50511.1Re-query CCDS DB by GeneID:208618See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50511.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045555.10 ENSMUSP00000041431.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045555.10Link to Ensembl Protein Viewer:ENSMUSP00000041431.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000045555Re-query CCDS DB by Protein ID:ENSMUSP00000041431
Original member Current member NCBI NM_178059.5 NP_835160.2 Accepted alive Link to Nucleotide Sequence:NM_178059.5Link to Protein Sequence:NP_835160.2Re-query CCDS DB by Nucleotide ID:NM_178059Re-query CCDS DB by Protein ID:NP_835160Link to BLAST:NP_835160.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835160.2 1352 A2AQ25-3 1352 100% 0 0

Chromosomal Locations for CCDS 50511.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 20519858 20519927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20529959 20530242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20661898 20662096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20709405 20709603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20713355 20713448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20743459 20744291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20760215 20760264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20766445 20766611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20778026 20778201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20780942 20781072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20781798 20781945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20785044 20785500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20788428 20788611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20797877 20798031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20798616 20798783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20801542 20801661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20807902 20808024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20808710 20809210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4059 nt):
ATGGAAGAAAGCGAAGGCCAGAAATGTGAGCCGAACCTGCCTCCCTCCGGAGACAGCAGACAGATGCCCC
AACAAGGGAGAAGCAATCTTCATGTAACATCTCAGGAAGATGCAGCATGCCGCAGGCCCAGGGAACGCCT
TTCTAATGGAAACGCCAGGGCTCAGGTTTCCAAGCCTGCCCGAAATATCCCAAGGAGACACACTCTAGGT
GGGCCCCGAAGTTCCAAAGAGATCCTGGGAATGCAGCCATCTGAGATGGACAGGAAGAGAGAGGCGTTCC
TAGAACATCTAAAGCAGAAGTACCCCCACCATGCCACAGCCATCATGGGCCACCAGGAGAGGCTGAGGGA
CCAGACAAAAAGTCCCAAGCTGTCCCACAGTCCTCAACCTCCCAATTTGGGGGATCCGGTTGAACATTTA
TCAGAGACATCTGGTGACTCTTTGGAAGCCATGTCCGAGGGAGAAGTACCGAGTCCTTTCGCCAGAGGCA
GTCGTACTCGCGCGAGCCTTCCCGTGGTGAGGTCGGCCAATCAAACAAAGGAAAGATCCCTGGGTGTCCT
CTACCTCCAGTATGGAGACGAAACCAAACAGCTGCGGATGCCGAATGAAGTCACAAGCACAGACACAATC
CGAGCTCTCTTCGTCAGTGCCTTTCCCCAGCAGCTCACCATGAAGATGCTGGAGTCGCCCAGTGTTGCCA
TCTACATCAAGGATGACAGCAGAAATGTCTACTATGAGTTAAATGATGTGAGGAATATCCAAGACAGATC
CCTTCTCAAAGTATACAACAAGGATCCTTCACATGCATTTAACCACATGACGAAAGCCGTGAACGGAGAC
ATGAGGATGCAGAGAGAAATTGTTTATGCAAGAGGAGATGGGCTTGTTGCCCCCCGACCAGGATCTGTGG
CTCACCCACCTCATGTAATTCCAAACTCCCCACCATCAACTCCGGTGCCCCATTCCTTACCTCCCTCTCC
ATCCAGAATTCCTTACGGGGGCAGCCGTCCAATGGCTATTCCTGGCAATGCCACCATCCCCAGGGACAGA
CTCTCGAGCCTGCCAGTATCCAGATCCATCTCCCCAAGCCCCAGCGCCATTTTGGAAAGAAGAGATGTCA
AACCGGATGAAGACATGAGCAGCAAAAACCTGGTTATGTTCAGAAATGAGGGTTTCTATGCCGACCCTTA
CCTCTATCATGAAGGACGAATGAGCATAGCCTCATCCCATGGCGGCCACCCTTTGGATGTCCCAGATCAT
GTCATTGCGTATCACCGCACAGCGATCCGGTCAGCGAGTGCTTACTGTAGCCCTTCCTTGCAAGCAGAAA
TGCATATGGAGCAGTCGTTATACAGACAAAAGTCAAGGAAATACCCTGATAGCCATTTGCCTACCTTGGG
CTCCAAAACGCCCCCAGCCTCTCCACACCGTGTGGGTGACTTAAGAATGATAGACCTGCACCCGCATCTT
AACACACATGGGCCCCCTCACACTCTGCAGCCAGACCGGGCCTCCCCCAGTCGCCAGTCCTTTAAAAAGG
AACCCGGCACCCTGGTGTACATCGAAAAGCCACGAAACACTTCAGGATTATCCAGCCTTGTAGACCTGGG
GCCTCCTCTAGTTGAGAAGCAAGGTTTTGCTTACAGCACCACTACAATCCCCAAAGACAGAGAAACCAGT
GAGAAAATGGTGAAAGCCACAGCCAACAGGAACCAAGCAGATGGTGCAGGAACGGCCCATGTTTCTGCAG
GGAAGGTTCTGGGCTCTGTGGAGTTCTCCCTGCCGCCCAGCCAACCCCTGCCTGCCGGAACCTCGCCCAT
CCACACTAGCCTGCTTGACATGAGGAGGAACGTGGCTGAACTCAGGCTCCAACTCCAGCAGATGAGGCAG
CTCCAGCTGCAGAACCAGGAGATTCTGAGGGCGATGATGAAGAAGGCTGAGCTGGAAATCAGTAACAAAG
TGAAGGAGACCATGAAGAGACTAGAGGATCCGGTACAGCGTCAGCGCACCCTGGTGGAGCAAGAGAGACA
GAAGTACCTCCACGAAGAAGAGCGGATTGTCAAAAAGTTATGTGAGCTGGAGGACTTTGTTGAGGACTTG
AAGAAGGACTCTTCCTCCACTGGCAGAGTGGTGACCCTGAAAGATGTGGAAGATGGGGCTTTCCTCCTGC
GACAAGTGGGAGAAGCTGTGGCCACTCTCAAAGGAGAATTTCCAACTTTGCAAAATAAGATGCGTGCTGT
CCTGCGCATAGAAGTTGAGGCAGTAAGGTTCCTGAAGGAAGAGCCACACAAGCTGGACAGTCTCCTGAAG
CGTGTGAGGAGCATGACAGATGTCTTGACGATGTTGCGGAGGCATGTCACTGATGGGCTCCTGAAAGGCA
CCGATGCATCCCAGGCTGCACAGTATGTTGCCATGGAGAAGGCCACAGCTGCAGAGGTCCTGAAGCATCA
GGAAGAGACAGCCCATGCCCCTGGGCAACCCCTCCACTGTAGCACTGGAAGCCCTGGCGATGTGAAGTCA
GAAGTGGTGCCCCTATCCACCATGACAGTTCACCATGTACAGAGCTCGCCTGTGGTCATGCAACCTTCCC
AGCACTCCTCAGCCTTGATGAACCCAGCCCAGAACTTGCCTGGAGGAACCAGACCTCACACAGCCAGCCC
TCCAGCAATCACACAGGAAGTAACCTCTGCCCAGTCAGCTCCAGGCCCCCAGTCCCCTCAGACCCCAGTG
AATGGTTCCTCCATGCAGAGCTTGTTCATTGAGGAAATTCACAGTGTGAGTGCCAAGAACAGGGCAGTGT
CCATTGAGAAGGCAGAAAAGAAATGGGAAGAAAAAAGGCAAAATCTGGAACACTATAACGGAAAGGAGTT
CGAGAAGCTCCTGGAGGAAGCTCAGGCCAACATCATGAAGTCAATTCCAAACCTGGAGATGCCCCCAGCT
TCCAGCCCAGTGTCAAAGGGAGATGCGGCAGGGGATAAGCTGGAGCTGTCAGAAGATTCTCCAAATTCAG
AGCAGGAATTGGACAAGATAGGGGGAAAGTCACCCCCTCCTCCACCCCCACCCCCTCGGAGAAGCTACCT
TCCTGGATCAGGACTTACCACCACGAGATCAGGCGATGTGGTCTACACTGGCAGGAGCATGTCTAAGGTG
AGCAGTGAAGACCCTGGGCCAACACCACAGACTAGAGCCACAAAATGTCCCCCGGAGGAACCTGCCTCAG
CCTGGGCCCCATCCCCACCACCAGTCCCTGCCCCTTCCTCCAAGGAGGAGGAGGAAGAAGAAGAAGAAGG
AGACAAAATCATGGCAGAACTCCAGGCATTCCAGAAGTGTTCCTTTATGGATGTAAATCCAAACAGTCAT
GCTGAGCAGTCCCGAGCTAACAGCCACCTTAAAGACACTAGGGCAGGCGCCACAGCCCCACCCAAGGAGA
AGAAGGGCTCCAGCACCACCCCACAGACAAGCCGGATGCCAGTCCCCATGACTTCCAAGAACAGACCCGG
AAGCCTGGATAAGGCCAGCAAGCAGTCCAAACTACAGGATCCCCGCCAATACCGTCAGGCTAATGGAAGT
GCTAAGAAAGCTGGTGGGGACTGTAAGCCTACTTCCCCCTCCTTACCTGCTTCTAAGATTCCAGCCCTTT
CTCCCAGCTCTGGGAAAAGCAGTTCTCTGCCTTCCGCTAGTGGGGACAGCTCTAACCTCCCCAATGCACC
TGCTACTAAACCATCGATTGCTTCTACCCCTCTCAGCCCCCAAGCAGGACGGTCCGCTCACTCCGCTTCC
CTCATCCCTTCTGTCTCTAATGGCTCCTTAAAGTTTCAGAGCCCACCTCACGCAGGTAAAGGCCATCATC
ACCTTTCGTTCGCACTGCAGACTCAAAATGGCCGAGCTGCCCCTACTACCTCTTCCTCCTCATCCCCTCC
TTCCCCTGCCTCCCCCACCTCCCTGAATCAAGGTGCCAGGGGCATCAGGACCATCCATACTCCTAGCCTC
GCCAGCTACAAAGCACAGAATGGAAGTTCAAGCAAAGCCACCCCATCCACAGCAAAAGAAACGTCTTAA

Translation (1352 aa):
MEESEGQKCEPNLPPSGDSRQMPQQGRSNLHVTSQEDAACRRPRERLSNGNARAQVSKPARNIPRRHTLG
GPRSSKEILGMQPSEMDRKREAFLEHLKQKYPHHATAIMGHQERLRDQTKSPKLSHSPQPPNLGDPVEHL
SETSGDSLEAMSEGEVPSPFARGSRTRASLPVVRSANQTKERSLGVLYLQYGDETKQLRMPNEVTSTDTI
RALFVSAFPQQLTMKMLESPSVAIYIKDDSRNVYYELNDVRNIQDRSLLKVYNKDPSHAFNHMTKAVNGD
MRMQREIVYARGDGLVAPRPGSVAHPPHVIPNSPPSTPVPHSLPPSPSRIPYGGSRPMAIPGNATIPRDR
LSSLPVSRSISPSPSAILERRDVKPDEDMSSKNLVMFRNEGFYADPYLYHEGRMSIASSHGGHPLDVPDH
VIAYHRTAIRSASAYCSPSLQAEMHMEQSLYRQKSRKYPDSHLPTLGSKTPPASPHRVGDLRMIDLHPHL
NTHGPPHTLQPDRASPSRQSFKKEPGTLVYIEKPRNTSGLSSLVDLGPPLVEKQGFAYSTTTIPKDRETS
EKMVKATANRNQADGAGTAHVSAGKVLGSVEFSLPPSQPLPAGTSPIHTSLLDMRRNVAELRLQLQQMRQ
LQLQNQEILRAMMKKAELEISNKVKETMKRLEDPVQRQRTLVEQERQKYLHEEERIVKKLCELEDFVEDL
KKDSSSTGRVVTLKDVEDGAFLLRQVGEAVATLKGEFPTLQNKMRAVLRIEVEAVRFLKEEPHKLDSLLK
RVRSMTDVLTMLRRHVTDGLLKGTDASQAAQYVAMEKATAAEVLKHQEETAHAPGQPLHCSTGSPGDVKS
EVVPLSTMTVHHVQSSPVVMQPSQHSSALMNPAQNLPGGTRPHTASPPAITQEVTSAQSAPGPQSPQTPV
NGSSMQSLFIEEIHSVSAKNRAVSIEKAEKKWEEKRQNLEHYNGKEFEKLLEEAQANIMKSIPNLEMPPA
SSPVSKGDAAGDKLELSEDSPNSEQELDKIGGKSPPPPPPPPRRSYLPGSGLTTTRSGDVVYTGRSMSKV
SSEDPGPTPQTRATKCPPEEPASAWAPSPPPVPAPSSKEEEEEEEEGDKIMAELQAFQKCSFMDVNPNSH
AEQSRANSHLKDTRAGATAPPKEKKGSSTTPQTSRMPVPMTSKNRPGSLDKASKQSKLQDPRQYRQANGS
AKKAGGDCKPTSPSLPASKIPALSPSSGKSSSLPSASGDSSNLPNAPATKPSIASTPLSPQAGRSAHSAS
LIPSVSNGSLKFQSPPHAGKGHHHLSFALQTQNGRAAPTTSSSSSPPSPASPTSLNQGARGIRTIHTPSL
ASYKAQNGSSSKATPSTAKETS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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