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Report for CCDS50271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50271.1 Public Mus musculus 18 Jakmip2 23 108 98 CCDS HistoryNCBI Gene:76217Re-query CCDS DB by CCDS ID:50271.1Re-query CCDS DB by GeneID:76217See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082254.7 ENSMUSP00000080881.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082254.7Link to Ensembl Protein Viewer:ENSMUSP00000080881.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000082254Re-query CCDS DB by Protein ID:ENSMUSP00000080881
Original member Current member NCBI NM_001163637.1 NP_001157109.1 Accepted alive Link to Nucleotide Sequence:NM_001163637.1Link to Protein Sequence:NP_001157109.1Re-query CCDS DB by Nucleotide ID:NM_001163637Re-query CCDS DB by Protein ID:NP_001157109Link to BLAST:NP_001157109.1

Chromosomal Locations for CCDS 50271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 43537676 43537726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43540586 43540651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43546945 43547148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43549616 43549693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43552158 43552226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43556481 43556546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43557330 43557383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43558140 43558238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43559094 43559192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43562531 43562593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43563269 43563352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43565863 43565991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43567091 43567210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43568068 43568124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43571054 43571194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43571852 43571998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43575461 43575559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43577300 43577509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43581833 43582330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43590548 43590676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2463 nt):
ATGTCCAAGAAAGGGCGGAATAAGGGCGAGAAGCCCGAGGCACTCATTGTTGCCCTTCAAGCTGCCAACG
AA
GACCTCAGGACCAAACTCACAGACATCCAGATAGAACTGCATCAAGAGAAATCCAAGGTATCAAAGCT
T
GAAAGAGAGAAGACTCAAGAAGCAAAGAGGATTCGTGAGTTGGAGCAGCGCAAACACACGGTCCTGGTG
ACC
GAGCTTAAAGCCAAGCTCCACGAGGAGAAGATGAAGGAGCTGCAGGCCGTGAGGGAGAATCTCATCA
AA
CAGCATGAGCAGGAAATGTCAAGGACAGTGAAGGTGCGGGATGGGGAGATTCAGAGACTCAAGTCCGC
G
CTGTGTGCTCTCCGGGATGGCAGCAGCGACAAAGTAAGGACAGCACTCACCATTGAGGCCCGGGAGGAG
GCC
CGGAAACAGTTCGATGCAGAGCGCCTGAAGCTCCTGCAGGAAATTACAGACTTGAAAACTGCCAAGA
AG
CAGGTGGATGAGGCTCTAAGCAATATGATCCAAGCGGATAAAATCAAAGCTGGGGACCTTAGGAGTGA
G
CATCAGTCCCACCAGGAAGCCATCTCGAAGATCAAGTGGGAATCCGAACGGGATATACGGAGGCTGATG
GAT
GAAATCAAAGCCAAGGACAGGATCATCTTTTCCCTGGAAAAAGAACTGGAGACTCAGACGGGCTATG
TG
CAGAAACTCCAGCTTCAGAAGGAGGCTCTGGATGAGCAGCTCTTCCTTGTCAAGGAGGCAGAGTGTAA
C
ATGAGCAGTCCGAAGAGAGAGATTCCAGGAAGGGCAGGAGACGGCTCTGAGCACTGCAGCAGCCCCGAC
CTG
CGAAGAAATCAAAAGAGAATAGCTGAGTTGAACGCCACTATACGAAAGTTAGAAGACAGGAACACCT
TG
CTTGGAGATGAGCGGAATGAGTTGTTAAAACGCGTGCGGGAAACCGAAAAACAATGCAAACCTCTCCT
G
GAAAGGAACAAGTGCCTAGCCAAGAGAAACGATGAACTGATGGTGTCTTTGCAGCGCATGGAAGAGAAA
CTA
AAAGCCGTAACCAAGGAAAATTCAGAAATGAGAGAAAAAATAACATCTCACCCACCTTTGAAGAAAC
TG
AAGTCTCTGAACGACCTTGACCAAGCTAATGAAGAACAAGAGACAGAGTTTCTAAAACTGCAGGTCAT
T
GAGCAGCAAAACATCATTGATGAGCTCACAAGGGATCGAGAAAAACTCATCCGTAGAAGAAAGCACAGG
AGA
AGCTCGAAACCAATCAAGAGGCCTGTTTTAGATCCGTTCATTGGCTATGACGAGGACTCCATGGATT
CA
GAAACATCATCCATGACCTCCTTTAGAACAGACCGGACACCTGCTACCCCCGATGATGACCTGGATGA
A
AGTCTAGCTGCTGAAGAATCTGAGCTACGATTTAGACAACTAACAAAAGAATACCAAGCCCTCCAAAGA
GCA
TATGCCCTCTTGCAGGAACAGACTGGCGGCATCATCGATGCTGAAAGAGAAGCCAAGGCACAAGAGC
AG
CTCCAGGCAGAGGTGCTGAGGTACAGGGCCAAAATCGAAGATCTAGAGGCAACGCTGGCTCAGAAAGG
G
CAGGATTCACACTGGGTAGAAGATAAACAACTTTTCATTAAGAGAAACCAGGAGCTTTTAGAAAAGATA
GAG
AAGCAGGAAGCAGAGAATCACCGGCTACAGCAGGAACTTCAGGATGCCAGGGACCAGAATGAGCTGC
TG
GAGTTTCGCAACCTAGAACTGGAAGAGAGAGAGAGGCGATCCCCTCCATTTAATCTACAAATTCACCC
C
TTCTCAGATGGTGTGAGTGCGCTGCAGATCTACTGCATGAAAGAAGGTGTCAAGGATGTCAACATCCCT
GAC
CTCATAAAGCAGCTTGATATCCTAGGTGACAACGGGAACCTAAGGAATGAAGAACAGGTGGCCATTA
TT
CAGGCCAGCACTGTGCTGTCCCTGGCAGAAAAGTGGATCCAACAAATTGAAGGAGCGGAGGCTGCCCT
G
CACCAGAAAATGATGGAACTGGAAAGTGACATGGAACAGTTCTGCAAAATCAAAGGCTACCTGGAGGAA
GAA
CTAGACTACAGAAAACAGGCTCTTGACCAGGCATATATGAGAATCCAGGAACTAGAAGCTACTTTGT
AC
AATGCTCTGCAGCAAGAAACTGTGATCAAATTCGGCGAACTGTTAAGTGACAAGCAGCAGGAGGAGCT
G
AGGACGGCTGTGGAAAAGTTACGGCGGCAAATGCTGAGGAAGAGCCGGGAGTACGACTGTCAGATCCTC
CAG
GAGAGGATGGAGCTCCTGCAGCAAGCGCACCAGAGAATCCGTGACCTAGAAGATAAAACAGACATCC
AA
AAGCGACAGATAAAGGACCTAGAAGAAAAGTTTCTGTTTCTATTCTTGTTCTTCTCTCTTGCCTTCAT
T
CTATGGCCTTGA


Translation (820 aa):
MSKKGRNKGEKPEALIVALQAANEDLRTKLTDIQIELHQEKSKVSKLEREKTQEAKRIRELEQRKHTVLV
T
ELKAKLHEEKMKELQAVRENLIKQHEQEMSRTVKVRDGEIQRLKSALCALRDGSSDKVRTALTIEAREE
A
RKQFDAERLKLLQEITDLKTAKKQVDEALSNMIQADKIKAGDLRSEHQSHQEAISKIKWESERDIRRL
M
D
EIKAKDRIIFSLEKELETQTGYVQKLQLQKEALDEQLFLVKEAECNMSSPKREIPGRAGDGSEHCSSP
D
L
RRNQKRIAELNATIRKLEDRNTLLGDERNEL
LKRVRETEKQCKPLLERNKCLAKRNDELMVSLQRMEEK
L
KAVTKENSEM
REKITSHPPLKKLKSLNDLDQANEEQETEFLKLQVIEQQNIIDELTRDREKLIRRRKHR
R
SSKPIK
RPVLDPFIGYDEDSMDSETSSMTSFRTDRTPATPDDDLDESLAAEESELRFRQLTKEYQALQR
A
YALLQEQTGGIIDAEREAK
AQEQLQAEVLRYRAKIEDLEATLAQKGQDSHWVEDKQLFIKRNQELLEKI
E
KQEAENHRLQQELQDARDQNELLEFRNLELE
ERERRSPPFNLQIHPFSDGVSALQIYCMKEGVKDVNIP
D
LIKQLDILGDNG
NLRNEEQVAIIQASTVLSLAEKWIQQIEGAEAALHQKMMELESDMEQFCKIKGYLEE
E
LDYRKQALDQAYM
RIQELEATLYNALQQETVIKFGELLSDKQQEELRTAVEKLRRQMLRKSREYDCQIL
Q
ERMELLQQAHQ
RIRDLEDKTDIQKRQIKDLEEKFLFLFLFFSLAFILWP



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser