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Report for CCDS50208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50208.1 Public Mus musculus 18 Vmn1r238 23 108 98 CCDS HistoryNCBI Gene:100312476Re-query CCDS DB by CCDS ID:50208.1Re-query CCDS DB by GeneID:100312476See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50208.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165255.2 ENSMUSP00000129804.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165255.2Link to Ensembl Protein Viewer:ENSMUSP00000129804.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000165255Re-query CCDS DB by Protein ID:ENSMUSP00000129804
Original member Current member NCBI NM_001167539.1 NP_001161011.1 Accepted alive Link to Nucleotide Sequence:NM_001167539.1Link to Protein Sequence:NP_001161011.1Re-query CCDS DB by Nucleotide ID:NM_001167539Re-query CCDS DB by Protein ID:NP_001161011Link to BLAST:NP_001161011.1

Chromosomal Locations for CCDS 50208.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 3122492 3123412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGAAAATGGATCCTGGAAATTTTGCAATAGAAACTTTTCTCTTCTGCCAGATTACAGTGGGAATGTTTG
GCAATTCCTCAATCCTATTTTATTATTTTATTTTGATATTTACAGAAAAGCATTTAACGCCCAAAGTCCT
GATTATAGAGCACTTGACTTTCGCCAACTACTTGACTGTCATCTTAAGAGGGTTTCCACAGACAATGTCA
TATTTTGGGTTTAAGAATTTCCTAGATGACATGGAATGTAAATTAATAGTGTATATTTCCCGAATAACAA
GGGGGGTGTCTCTTTATGCTATGTGCCTAGTGAGTTGTTTCCAAGCAATCACCATCAGCCCCAATAACTC
CAGGTGGATAAAGCTTAAATACAGAGCAACCAAGTACATTGGTCCCTCCTGCTCAGTCAGTTGGCTCGTG
CACCTGCTTCTAAACATCTTGACTCCACTAAGAGAATCAGGCACCAATTACAAGAAAAATGCAACTAACA
GGTTGAGTTATGGATACTGCTCATTGTTTGCTTCTGACAGTGTAGCAACTACATTGTATATATCTTTAGT
GTGCTTCTCTGATGTCTTCTGTCTGGGTCTCATGGCCTGCTCAAGTATCTCCATGGTTAGTATTCTCTAC
AGACATAAGAGACAAGTCAAGCATAACCACAGTGCTCAACACTTTCTGAAAGTCTCACCTGAAGACAGAG
CCACCCAAACTATCCTCATCCTGCTGTGCACATTTGTCATCTCTTACTCATTCTCTTCCATTGTGGCTAT
CATTAGAACCTACTTAAACTATCCAGTGATATGGGGAGTAAATATATTTACATCTCTAGAAATATTCTTT
CCCATGTTTTGTCCCTTTGTTCTCATCACCAATATGAGATCTAGTTCCAATCTGTTTTTACCCTGCTTAG
GTAAGAGATAA

Translation (306 aa):
MKMDPGNFAIETFLFCQITVGMFGNSSILFYYFILIFTEKHLTPKVLIIEHLTFANYLTVILRGFPQTMS
YFGFKNFLDDMECKLIVYISRITRGVSLYAMCLVSCFQAITISPNNSRWIKLKYRATKYIGPSCSVSWLV
HLLLNILTPLRESGTNYKKNATNRLSYGYCSLFASDSVATTLYISLVCFSDVFCLGLMACSSISMVSILY
RHKRQVKHNHSAQHFLKVSPEDRATQTILILLCTFVISYSFSSIVAIIRTYLNYPVIWGVNIFTSLEIFF
PMFCPFVLITNMRSSSNLFLPCLGKR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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