CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
 |
Report for CCDS49674.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
49674.2 |
Reviewed, update pending |
Mus musculus |
15 |
Mrtfa |
23 |
108 |
98 |
          |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
Non-AUG initiation codon |
Sequence IDs included in CCDS 49674.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
 |
 |
EBI |
ENSMUST00000134469.8 |
ENSMUSP00000119530.2 |
Accepted |
alive |
      |
 |
 |
EBI |
ENSMUST00000239114.1 |
ENSMUSP00000159052.1 |
Accepted |
alive |
      |
 |
 |
NCBI |
NM_001082536.2 |
NP_001076005.2 |
Pending |
alive |
        |
Chromosomal Locations for CCDS 49674.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also. |
Translation Exceptions: replace the symbol V (codon GTG) with M at amino acid position 1
Nucleotide Sequence (3090 nt): GTGGATTTCTCCAGTGTGGTGTGCCTGCCCCCTTCCGTCATTGCTGTGAATGGGCTGGACGGAGGAGGGG CTGGCGAAAATGACGACGAGCCAGTGCTCCTGTCTCTGTCTGCGGCCCCCAGCCCCCAGAGCGAAGCTGT TGCCAATGAACTGCAGGAGCTGTCCCTGCAGCCCGAGCTGACTCTAGGCCTCCATCCTGGGAGGAACCCC AATTTACCTCCACTTAGTGAGCGGAAGAATGTGCTGCAGTTGAAGCTCCAGCAGCGGCGGACCCGGGAGG AACTGGTGAGCCAAGGGATCATGCCGCCTTTGAAAAGCCCCGCTGCATTTCATGAGCAGAGAAGAAGCCT GGAGCGGGCCAGGACCGAGGACTATTTGAAACGGAAGATCCGTTCCCGGCCCGAGAGAGCAGAGCTGGTC AGGATGCACATTCTGGAAGAGACCTCGGCTGAGCCTTCGCTCCAGGCCAAGCAGCTGAAGCTGAAGAGAG CCAGGCTGGCTGATGACCTCAATGAAAAGATTGCACAGAGGCCTGGCCCCATGGAGCTGGTGGAGAAGAA TATCCTGCCTGTGGAGTCCAGCCTGAAGGAGGCTATCATTGTGGGCCAGGTAAATTACCCAAAGGTAGCA GACAGTTCCTCCTTCGACGAGGACAGCAGCGATGCCCTGTCTCCTGAGCAGCCTGCCAGCCATGAGTCCC AGGGTTCAGTGCCATCACCCTTGGAGTCCCGAGTCAGTGATCCACTGCCCAGTGCCACCTCCATATCACC CACTCAGGTTCTTTCTCAACTCCCAATGGCTCCGGATCCTGGAGAGACGCTTTTTCTGGCAGAGCAGCCT CCTCTGCCTCCCGCACCTCTGCTGCCCCCAAGCCTAGCCAATGGAAGCATCGTCCCCACTGCCAAGCCTG CTCCCACACTCATCAAGCAAAGCCAACCCAAGTCTGCCAGCGAGAAATCACAGCGCAGCAAGAAGGCCAA GGAGCTGAAGCCAAAGGTGAAGAAGCTCAAGTACCACCAGTACATCCCCCCGGACCAGAAGCAGGACAAG GGGGCGCCCGCCATGGACTCCTCCTATGCCAAGATCCTGCAGCAGCAGCAGCTCTTCCTGCAGCTGCAGA TCCTCAACCAGCAGCAGCAGCAGCAGCAGCAACAGCACTACAACTACCAGGCCATCCTGCCTGCCCCTCC CAAGCCCTCGGCTGAGACTCCTGGAAGCAGTGCCCCTACCCCATCACGCAGCCTCTCCACCAGTAGCAGC CCCAGCTCAGGCACCCCAGGGCCCAGCGGGCTGGCACGCCAGAGCAGCACCGCACTAGCTGCCAAACCAG GAGCCCTGCCAGCCAACCTGGATGACATGAAGGTGGCAGAGCTGAAGCAAGAACTGAAGTTGCGGTCCCT TCCCGTCTCAGGCACCAAGACAGAGCTGATAGAACGCCTGCGTGCCTACCAAGACCAAGTCAGCCCAGCT CCAGGAGCCCCCAAGGCCCCTGCCACCACCTCTGTGCTGTCCAAGGCTGGTGAGGTAGTGGTCGCCTTCC CTGCGGCCCTGCTAAGCACAGGGTCAGCTCTTGTAACAGCAGGCCTTGCACCAGCTGAGATGGTGGTGGC CACAGTAACCAGCAATGGCATGGTGAAGTTTGGCAGCACAGGCTCCACACCCCCCGTGTCTCCCACCCCT TCAGAGCGCTCACTGCTCAGCACGGGTGATGAGAATTCCACACCTGGGGATGCCTTTGGTGAAATGGTGA CATCGCCGCTGACACAGCTCACCCTGCAGGCCTCCCCACTGCAGATCGTGAAGGAGGAGGGTGCCCGTGC TGCGTCCTGCTGTCTAAGCCCTGGTGCTCGGGCTGAGCTGGAGGGACTGGACAAGGACCAGATGCTGCAG GAGAAGGACAAGCAGATTGAGGAGCTGACCCGAATGCTCCAACAGAAGCAGCAGCTGGTTGAGCTGCTGC GGCTACAGCTGGAGCAGCAGAAGCGGGCCCAGCAGCCAGCCCCAGCCAGCAGCCCTGTGAAGAGGGAAAG TGGTTTCTCCAGTTGCCAGCTGAGCTGCCAGCCCCAGGGCTCTGCCCATGCTTTTGGCTCTGGCCTAGTG GTTCCCACTACCAACCATGGAGACACTCAGGCCCCAGCGCCAGAGTCCCCACCTGTGGTGGTGAAGCAGG AAGCTGGGCCACCTGAGCCAGATCTGGCCCCCAGCTCCCAGCTGCTCTTGGGCTCCCAGGGCACCAGCTT CCTCAAGAGGGTCAGCCCTCCTACCCTGGTCACTGACTCTACAGGGACTCACCTCATCCTCACTGTGACC AATAAGAGTGCTGATGGCCCTGGCTTGCCTGCAGGGAGCCCCCAGCAGCCCTTGTCCCAGCCTGGTTCTC CAGCCCCTGGTCCACCTGCCCAGATGGACCTGGAGCACCCACCTCAGCCTCCGTTTGCAACCCCCACATC TCTGCTGAAGAAGGAGCCCCCTGGTTATGAAGAGACTGTGACCCAGCAGCCTAAGCAGCAGGAAAATGGC TCCTCCAGTCAGCACATGGATGATCTGTTTGATATTCTTATTCAGAGTGGAGAGATTTCAGCAGATTTCA AAGAGCCACCATCCCTACCAGGCAAGGAAAAGTCACCTCCAGCAGCAGCAGCGTATGGGCCTCCATTGAC ACCACAACCCTCGCCTTTGAGTGAACTCCCCCAAGCTGCTCCTCCACCAGGTTCCCCCACCCTCCCAGGG CGCCTTGAAGACTTCCTGGAGAGCAGCACAGGGCTGCCCCTGCTGACAAGTGGGCACGAGGGACCAGAAC CCCTTTCCCTCATTGATGACCTCCACAGCCAGATGCTGAGCAGCTCCGCCATCCTGGACCACCCCCCATC ACCCATGGACACCTCTGAATTGCACTTTGCTCCTGAGCCCAGCAGTGGTATGGGCCTGGACCTGGCTGTT GGCCACCTGGACAGCATGGACTGGCTGGAGCTGTCGTCTGGTGGCCCTGTGCTCAGCCTGGCTCCCCTCA GCACTGCAGCCCCCAGCCTCTTCTCGATGGACTTCCTGGATGGACACGACTTGCAGCTCCACTGGGATTC CTGCTTGTAG
Translation (1029 aa): MDFSSVVCLPPSVIAVNGLDGGGAGENDDEPVLLSLSAAPSPQSEAVANELQELSLQPELTLGLHPGRNP NLPPLSERKNVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQRRSLERARTEDYLKRKIRSRPERAELV RMHILEETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILPVESSLKEAIIVGQVNYPKVA DSSSFDEDSSDALSPEQPASHESQGSVPSPLESRVSDPLPSATSISPTQVLSQLPMAPDPGETLFLAEQP PLPPAPLLPPSLANGSIVPTAKPAPTLIKQSQPKSASEKSQRSKKAKELKPKVKKLKYHQYIPPDQKQDK GAPAMDSSYAKILQQQQLFLQLQILNQQQQQQQQQHYNYQAILPAPPKPSAETPGSSAPTPSRSLSTSSS PSSGTPGPSGLARQSSTALAAKPGALPANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQVSPA PGAPKAPATTSVLSKAGEVVVAFPAALLSTGSALVTAGLAPAEMVVATVTSNGMVKFGSTGSTPPVSPTP SERSLLSTGDENSTPGDAFGEMVTSPLTQLTLQASPLQIVKEEGARAASCCLSPGARAELEGLDKDQMLQ EKDKQIEELTRMLQQKQQLVELLRLQLEQQKRAQQPAPASSPVKRESGFSSCQLSCQPQGSAHAFGSGLV VPTTNHGDTQAPAPESPPVVVKQEAGPPEPDLAPSSQLLLGSQGTSFLKRVSPPTLVTDSTGTHLILTVT NKSADGPGLPAGSPQQPLSQPGSPAPGPPAQMDLEHPPQPPFATPTSLLKKEPPGYEETVTQQPKQQENG SSSQHMDDLFDILIQSGEISADFKEPPSLPGKEKSPPAAAAYGPPLTPQPSPLSELPQAAPPPGSPTLPG RLEDFLESSTGLPLLTSGHEGPEPLSLIDDLHSQMLSSSAILDHPPSPMDTSELHFAPEPSSGMGLDLAV GHLDSMDWLELSSGGPVLSLAPLSTAAPSLFSMDFLDGHDLQLHWDSCL
|