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Report for CCDS49674.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49674.2 Reviewed, update pending Mus musculus 15 Mrtfa 23 108 98 CCDS HistoryNCBI Gene:223701Re-query CCDS DB by CCDS ID:49674.2Re-query CCDS DB by GeneID:223701See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 49674.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000134469.8 ENSMUSP00000119530.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134469.8Link to Ensembl Protein Viewer:ENSMUSP00000119530.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000134469Re-query CCDS DB by Protein ID:ENSMUSP00000119530
Original member Current member EBI ENSMUST00000239114.1 ENSMUSP00000159052.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239114.1Link to Ensembl Protein Viewer:ENSMUSP00000159052.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239114Re-query CCDS DB by Protein ID:ENSMUSP00000159052
Original member Current member NCBI NM_001082536.2 NP_001076005.2 Pending alive Link to Nucleotide Sequence:NM_001082536.2Link to Protein Sequence:NP_001076005.2Re-query CCDS DB by Nucleotide ID:NM_001082536Re-query CCDS DB by Protein ID:NP_001076005Link to BLAST:NP_001076005.2

Chromosomal Locations for CCDS 49674.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81013285 81013802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81015349 81015409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81015759 81015911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81016231 81017226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81017951 81018119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81018214 81018479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81020165 81020314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81020753 81020928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81022397 81022558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81023542 81023617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81026662 81026717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81045289 81045354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81117391 81117631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol V (codon GTG) with M at amino acid position 1

Nucleotide Sequence (3090 nt):
GTGGATTTCTCCAGTGTGGTGTGCCTGCCCCCTTCCGTCATTGCTGTGAATGGGCTGGACGGAGGAGGGG
CT
GGCGAAAATGACGACGAGCCAGTGCTCCTGTCTCTGTCTGCGGCCCCCAGCCCCCAGAGCGAAGCTGT
T
GCCAATGAACTGCAGGAGCTGTCCCTGCAGCCCGAGCTGACTCTAGGCCTCCATCCTGGGAGGAACCCC
AAT
TTACCTCCACTTAGTGAGCGGAAGAATGTGCTGCAGTTGAAGCTCCAGCAGCGGCGGACCCGGGAGG
AA
CTGGTGAGCCAAGGGATCATGCCGCCTTTGAAAAGCCCCGCTGCATTTCATGAGCAGAGAAGAAGCCT
G
GAGCGGGCCAGGACCGAGGACTATTTGAAACGGAAGATCCGTTCCCGGCCCGAGAGAGCAGAGCTGGTC
AGG
ATGCACATTCTGGAAGAGACCTCGGCTGAGCCTTCGCTCCAGGCCAAGCAGCTGAAGCTGAAGAGAG
CC
AGGCTGGCTGATGACCTCAATGAAAAGATTGCACAGAGGCCTGGCCCCATGGAGCTGGTGGAGAAGAA
T
ATCCTGCCTGTGGAGTCCAGCCTGAAGGAGGCTATCATTGTGGGCCAGGTAAATTACCCAAAGGTAGCA
GAC
AGTTCCTCCTTCGACGAGGACAGCAGCGATGCCCTGTCTCCTGAGCAGCCTGCCAGCCATGAGTCCC
AG
GGTTCAGTGCCATCACCCTTGGAGTCCCGAGTCAGTGATCCACTGCCCAGTGCCACCTCCATATCACC
C
ACTCAGGTTCTTTCTCAACTCCCAATGGCTCCGGATCCTGGAGAGACGCTTTTTCTGGCAGAGCAGCCT
CCT
CTGCCTCCCGCACCTCTGCTGCCCCCAAGCCTAGCCAATGGAAGCATCGTCCCCACTGCCAAGCCTG
CT
CCCACACTCATCAAGCAAAGCCAACCCAAGTCTGCCAGCGAGAAATCACAGCGCAGCAAGAAGGCCAA
G
GAGCTGAAGCCAAAGGTGAAGAAGCTCAAGTACCACCAGTACATCCCCCCGGACCAGAAGCAGGACAAG
GGG
GCGCCCGCCATGGACTCCTCCTATGCCAAGATCCTGCAGCAGCAGCAGCTCTTCCTGCAGCTGCAGA
TC
CTCAACCAGCAGCAGCAGCAGCAGCAGCAACAGCACTACAACTACCAGGCCATCCTGCCTGCCCCTCC
C
AAGCCCTCGGCTGAGACTCCTGGAAGCAGTGCCCCTACCCCATCACGCAGCCTCTCCACCAGTAGCAGC
CCC
AGCTCAGGCACCCCAGGGCCCAGCGGGCTGGCACGCCAGAGCAGCACCGCACTAGCTGCCAAACCAG
GA
GCCCTGCCAGCCAACCTGGATGACATGAAGGTGGCAGAGCTGAAGCAAGAACTGAAGTTGCGGTCCCT
T
CCCGTCTCAGGCACCAAGACAGAGCTGATAGAACGCCTGCGTGCCTACCAAGACCAAGTCAGCCCAGCT
CCA
GGAGCCCCCAAGGCCCCTGCCACCACCTCTGTGCTGTCCAAGGCTGGTGAGGTAGTGGTCGCCTTCC
CT
GCGGCCCTGCTAAGCACAGGGTCAGCTCTTGTAACAGCAGGCCTTGCACCAGCTGAGATGGTGGTGGC
C
ACAGTAACCAGCAATGGCATGGTGAAGTTTGGCAGCACAGGCTCCACACCCCCCGTGTCTCCCACCCCT
TCA
GAGCGCTCACTGCTCAGCACGGGTGATGAGAATTCCACACCTGGGGATGCCTTTGGTGAAATGGTGA
CA
TCGCCGCTGACACAGCTCACCCTGCAGGCCTCCCCACTGCAGATCGTGAAGGAGGAGGGTGCCCGTGC
T
GCGTCCTGCTGTCTAAGCCCTGGTGCTCGGGCTGAGCTGGAGGGACTGGACAAGGACCAGATGCTGCAG
GAG
AAGGACAAGCAGATTGAGGAGCTGACCCGAATGCTCCAACAGAAGCAGCAGCTGGTTGAGCTGCTGC
GG
CTACAGCTGGAGCAGCAGAAGCGGGCCCAGCAGCCAGCCCCAGCCAGCAGCCCTGTGAAGAGGGAAAG
T
GGTTTCTCCAGTTGCCAGCTGAGCTGCCAGCCCCAGGGCTCTGCCCATGCTTTTGGCTCTGGCCTAGTG
GTT
CCCACTACCAACCATGGAGACACTCAGGCCCCAGCGCCAGAGTCCCCACCTGTGGTGGTGAAGCAGG
AA
GCTGGGCCACCTGAGCCAGATCTGGCCCCCAGCTCCCAGCTGCTCTTGGGCTCCCAGGGCACCAGCTT
C
CTCAAGAGGGTCAGCCCTCCTACCCTGGTCACTGACTCTACAGGGACTCACCTCATCCTCACTGTGACC
AAT
AAGAGTGCTGATGGCCCTGGCTTGCCTGCAGGGAGCCCCCAGCAGCCCTTGTCCCAGCCTGGTTCTC
CA
GCCCCTGGTCCACCTGCCCAGATGGACCTGGAGCACCCACCTCAGCCTCCGTTTGCAACCCCCACATC
T
CTGCTGAAGAAGGAGCCCCCTGGTTATGAAGAGACTGTGACCCAGCAGCCTAAGCAGCAGGAAAATGGC
TCC
TCCAGTCAGCACATGGATGATCTGTTTGATATTCTTATTCAGAGTGGAGAGATTTCAGCAGATTTCA
AA
GAGCCACCATCCCTACCAGGCAAGGAAAAGTCACCTCCAGCAGCAGCAGCGTATGGGCCTCCATTGAC
A
CCACAACCCTCGCCTTTGAGTGAACTCCCCCAAGCTGCTCCTCCACCAGGTTCCCCCACCCTCCCAGGG
CGC
CTTGAAGACTTCCTGGAGAGCAGCACAGGGCTGCCCCTGCTGACAAGTGGGCACGAGGGACCAGAAC
CC
CTTTCCCTCATTGATGACCTCCACAGCCAGATGCTGAGCAGCTCCGCCATCCTGGACCACCCCCCATC
A
CCCATGGACACCTCTGAATTGCACTTTGCTCCTGAGCCCAGCAGTGGTATGGGCCTGGACCTGGCTGTT
GGC
CACCTGGACAGCATGGACTGGCTGGAGCTGTCGTCTGGTGGCCCTGTGCTCAGCCTGGCTCCCCTCA
GC
ACTGCAGCCCCCAGCCTCTTCTCGATGGACTTCCTGGATGGACACGACTTGCAGCTCCACTGGGATTC
C
TGCTTGTAG


Translation (1029 aa):
MDFSSVVCLPPSVIAVNGLDGGGAGENDDEPVLLSLSAAPSPQSEAVANELQELSLQPELTLGLHPGRNP
N
LPPLSERKN
VLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQRRSLERARTEDYLKRKIRSRPERAELV
R
MHILE
ETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILPVESSLKEAIIVGQVNYPKVA
D
SSSFDEDSSDALSPEQPASHESQGSVPSPLESRVSDPLPSATSISPTQ
VLSQLPMAPDPGETLFLAEQP
P
LPPAPLLPPSLANGSIVPTAKPAPTLIK
QSQPKSASEKSQRSKKAKELKPKVKKLKYHQYIPPDQKQDK
G
APAMDSSYAKILQQQQLFLQLQILNQQQQQQQQQHYNYQAILPAPP
KPSAETPGSSAPTPSRSLSTSSS
P
SSGTPGPSGLARQSSTALAAKPGALPANLDDMK
VAELKQELKLRSLPVSGTKTELIERLRAYQDQVSPA
P
GAPKAPATTSVLSKAGEVVVAFPAALLSTGSALVTAGLAPAEMVVATVTSNGMVKFGSTGSTPPVSPTP
S
ERSLLSTGDENSTPGDAFGEMVTSPLTQLTLQASPLQIVKEEGARAASCCLSPGARAELEGLDKDQMLQ
E
KDKQIEELTRMLQQKQQLVELLRLQLEQQKRAQQPAPASSPVKRESGFSSCQLSCQPQGSAHAFGSGLV
V
PTTNHGDTQAPAPESPPVVVKQEAGPPEPDLAPSSQLLLGSQGTSFLKRVSPPTLVTDSTGTHLILTVT
N
KSADGPGLPAGSPQQ
PLSQPGSPAPGPPAQMDLEHPPQPPFATPTSLLKKEPPGYEETVTQQPKQQENG
S
SSQHMDDLFDILIQSG
EISADFKEPPSLPGKEKSPPAAAAYGPPLTPQPSPLSELPQAAPPPGSPTLPG
R
LEDFLESSTGLPLLTSGHEGPEPLSLIDDLHSQMLSSSAILDHPPSPMDTSELHFAPEPSSGMGLDLAV
G
HLDSMDWLELSSGGPVLSLAPLSTAAPSLFSMDFLDGHDLQLHWDSCL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser