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Report for CCDS49222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49222.1 Public Mus musculus 13 Prl3d2 23 108 98 CCDS HistoryNCBI Gene:215028Re-query CCDS DB by CCDS ID:49222.1Re-query CCDS DB by GeneID:215028See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49222.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080755.11 ENSMUSP00000079579.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080755.11Link to Ensembl Protein Viewer:ENSMUSP00000079579.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080755Re-query CCDS DB by Protein ID:ENSMUSP00000079579
Original member Current member NCBI NM_172155.2 NP_742167.1 Accepted alive Link to Nucleotide Sequence:NM_172155.2Link to Protein Sequence:NP_742167.1Re-query CCDS DB by Nucleotide ID:NM_172155Re-query CCDS DB by Protein ID:NP_742167Link to BLAST:NP_742167.1

Chromosomal Locations for CCDS 49222.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27121742 27121772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27122326 27122480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27123927 27124034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27125851 27126030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27127221 27127418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGCAGCTGACTTTGACTCTTTCAGGCTCCGGAATGCAATTGTTGCTGCTGGTGTCAAGCCTACTCCTTT
GGGAGAATGTGTCCTCTAAACCAACTGCCATGGTGCCCACTGACGACCTGTATACACGTTTGGCTGAACT
GTCTCATAATACATTTATCTTGGCCGCAGATGTGTACAGGGAATTTGATTTGGATTTTTTTGATAAAACT
TGGATAACAGACAGAACACTTCCCCTGTGTCATACTGCTTCCATCCATACTCCAGAGAATCGAGAGGAAG
TCCATGAAATTAAAACTGAAGACCTTCTGAAAGCAATGATCAATGTTTCAATTTCCTGGAAAGAACCTCT
GAAACACCTGGTGTCTGCACTGACTGCTCTTCCAGGAGCTTCTGAGAGTATGGGGAAAAAAGCTGCTGAC
ATTAAGGGCAGAAACCTTATAATTCTGGAGGGACTTCAGACAATATACAACAGGACTCAGGCTAACATTG
AAGAAAATGAAAATTTTGACTACCCTGCTTGGACTGGACTCGAAGAACTGCAGTCACCTAATGAAGACAC
TCATCTTTTTGCTGTTTATAACCTATGCCGCTGCATTAAAAGGGACATCCATAAGATAGACAGCTATATC
AAAGTCTTGAGGTGCCGAGTTGTCTTTCAGAACGAATGTTGA

Translation (223 aa):
MQLTLTLSGSGMQLLLLVSSLLLWENVSSKPTAMVPTDDLYTRLAELSHNTFILAADVYREFDLDFFDKT
WITDRTLPLCHTASIHTPENREEVHEIKTEDLLKAMINVSISWKEPLKHLVSALTALPGASESMGKKAAD
IKGRNLIILEGLQTIYNRTQANIEENENFDYPAWTGLEELQSPNEDTHLFAVYNLCRCIKRDIHKIDSYI
KVLRCRVVFQNEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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