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Report for CCDS48961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48961.1 Public Mus musculus 11 Scn4a 23 108 98 CCDS HistoryNCBI Gene:110880Re-query CCDS DB by CCDS ID:48961.1Re-query CCDS DB by GeneID:110880See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021056.7 ENSMUSP00000021056.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021056.7Link to Ensembl Protein Viewer:ENSMUSP00000021056.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021056Re-query CCDS DB by Protein ID:ENSMUSP00000021056
Original member NCBI NM_133199.2 NP_573462.2 Updated not alive Link to Nucleotide Sequence:NM_133199.2Link to Protein Sequence:NP_573462.2Re-query CCDS DB by Nucleotide ID:NM_133199Re-query CCDS DB by Protein ID:NP_573462
Current member NCBI NM_133199.3 NP_573462.2 Accepted alive Link to Nucleotide Sequence:NM_133199.3Link to Protein Sequence:NP_573462.2Re-query CCDS DB by Nucleotide ID:NM_133199Re-query CCDS DB by Protein ID:NP_573462Link to BLAST:NP_573462.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573462.2 1841 Q9ER60 1841 99.9457% 0 1

Chromosomal Locations for CCDS 48961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106319664 106320919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106321908 106322178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106322788 106322892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106323876 106324013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106324208 106324261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106324447 106324725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106326131 106326253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106326706 106326879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106327511 106327665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106328020 106328155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106329997 106330473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106335375 106335731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106337060 106337233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106339154 106339392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106341422 106341575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106342311 106342520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106343892 106344033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106344214 106344277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106345415 106345729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106347757 106347848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106348272 106348400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106348703 106348792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106348900 106349018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106349117 106349389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5526 nt):
ATGGCCAGCTCATCTCTGCCCACCCTGGTCCCCCCTGGTCCCCACTGCCTGCGCCCCTTCACCCCAGAGT
CCCTGGCAGCCATAGAACAGCGGGCAATGGAGGAGGAAGCCCGGCTGCAGCGGAACAAGCAAATGGAGAT
TGAAGAGCCTGAGCGGAAGCCACGCAGTGACCTGGAAGCTGGCAAGAACCTCCCACTCATCTATGGGGAC
CCCCCACCTGAAGTCATTGGCGTCCCCCTGGAGGACCTGGACCCTTACTACAGTGACAAGAAGACCTTCA
TTGTGCTCAACAAAGGAAAGGCCATCTTCCGATTCTCTGCCACCCCTGCCCTCTACATGCTGAGCCCCTT
CAGCATCGTCCGGCGGGTGGCTATCAAGGTGCTCATCCACGCGCTGTTCAGCATGTTCATCATGATCACC
ATCTTGACCAACTGCGTGTTCATGACCATGAGCAACCCGCCTTCTTGGTCCAAGGACGTGGAGTACACCT
TCACAGGGATCTACACCTTTGAGTCCCTCATTAAGATGCTGGCCCGAGGCTTTTGCATTGATGACTTCAC
ATTCCTCCGAGACCCCTGGAACTGGCTGGACTTCAGTGTCATCACAATGGCGTACGTGACAGAGTTTGTG
GACTTGGGCAACATCTCAGCCCTGAGGACCTTCCGTGTGCTGCGGGCCCTGAAAACCATCACGGTCATCC
CAGGGCTGAAGACGATCGTGGGAGCCCTGATCCAGTCTGTGAAAAAGCTCTCGGATGTGATGATCCTCAC
TGTCTTCTGCCTGAGCGTCTTTGCCCTGGTGGGGCTGCAGCTTTTCATGGGAAACCTGCGTCAGAAGTGC
GTGCGTTGGCCCCCGCCCATGAATGACACCAACACCACGTGGTATGGTAATGATACGTGGTACGGCAATG
ACACCTGGTACGGCAATGACACCTGGTATGGCAATGACACTTGGAACAGCCAGGAGAGCTGGGTCAGCAA
CTCTACCTTTGACTGGGAGGCCTACATCAATGACGAAGGGAACTTCTATTTCTTGGAGGGCTCCAATGAT
GCCCTGCTCTGTGGGAATAGCAGTGATGCCGGGCACTGCCCTGAGGGCTACGAATGCATGAAGGCTGGGA
GGAACCCCAACTATGGCTACACCAGCTACGACACCTTCAGCTGGGCCTTCCTGGCTCTCTTCCGTCTCAT
GACGCAGGACTACTGGGAGAACCTTTTCCAGCTGACCCTTCGAGCCGCTGGCAAGACCTACATGATCTTC
TTTGTGGTCATCATCTTCCTGGGTTCCTTCTACCTCATCAATCTGATCCTGGCGGTGGTGGCCATGGCAT
ATGCTGAGCAGAATGAGGCTACCCTGGCCGAAGACCAGGAGAAAGAGGAGGAGTTCCAACAGATGCTTGA
AAAATTCAAAAAACATCAGGAGGAACTGGAAAAGGCGAAGGCTGCCCAGGCTCTGGAAGGTGGAGAGGAG
GCAGATGGGGACCCAACCCACAGCAAAGACTGCAATGGTAGCCTGGATACATCCGGGGAGAAGGGGCCCC
CAAGGCCAAGCTGCAGCGCAGAGAGTGCCATCTCAGATGCTATGGAGGAGCTGGAAGAGGCCCATCAGAA
GTGCCCCCCATGGTGGTACAAGTGTGCACACAAAGTGCTCATCTGGAACTGCTGTGCCCCGTGGGTGAAG
TTCAAGCATATTATCCTCCTGATTGTCATGGACCCCTTTGTGGACCTGGGCATCACCATCTGCATCGTGC
TCAACACCCTCTTCATGGCCATGGAGCACTACCCCATGACTGAGCACTTTGACAACGTGCTCTCTGTGGG
CAACTTGGTCTTCACGGGCATCTTCACTGCAGAGATGGTGCTGAAGTTGATTGCTATGGACCCCTACGAA
TATTTCCAACAGGGCTGGAACATCTTCGACAGCTTCATCGTCACCCTCAGCCTGGTGGAGCTGGGCCTGG
CCAACGTGCAGGGCCTATCAGTGCTCCGTTCTTTCCGTCTGCTGCGTGTCTTCAAGCTGGCCAAGTCATG
GCCAACACTCAACATGCTCATCAAAATCATTGGCAACTCAGTGGGTGCGCTGGGCAACCTGACCCTGGTG
TTGGCCATCATCGTCTTCATCTTCGCCGTGGTGGGCATGCAGCTGTTTGGCAAGAGCTATAAGGAATGCG
TGTGCAAGATTGCCTCAGACTGCAGCCTGCCCCGCTGGCACATGCACGATTTCTTCCACTCCTTCCTCAT
CGTCTTCCGCATCCTCTGTGGGGAGTGGATCGAGACCATGTGGGACTGCATGGAAGTGGCCGGCCAGGCC
ATGTGCCTCACCGTCTTCCTCATGGTCATGGTCATTGGCAACCTGGTGGTCCTGAATCTGTTCCTGGCTC
TCCTGTTGAGTTCCTTCAGCGCTGACAGTCTGGCAGCGTCAGATGAAGATGGTGAGATGAACAACCTACA
GATCGCCATCGGGCGTATCAAGTGGGGCATCGCCTTTGCCAAAACCTTCCTCTTGGGGCTGTTGCATGGC
AAGATCCTGAGCCTCAAAGACATAATGCTCAGTCTCGGGGAGCCTGGGGGTGCTGGGGAAAACGGGGAGA
GCCCTCCCGAGGATGAGAAGAAGGAACCACCTCCGGAAGATGGGAACAAGGAGCTGAAAGACAATCATAT
CCTGAACCACGTGGGCCTGACTGATGGACCCCGCTCCAGCATCGAGATGGACCACCTTAACTTCATCAAC
AACCCCTACCTCACTATCCATGTGCCCATTGCCTCCGAGGAGTCCGACTTGGAAATGCCCACAGAGGAGG
AGACTGACACCTTCTCGGAGCCTGAGGACATCAAGAAGCCACTACAGCCTCTGTACGACGGGAACTCCTC
CGTCTGCAGCACAGCTGACTACAAGCCCCCCGAAGAGGACCCTGAGGAGCAGGCTGAGGAGAACCCTGAG
GGGGAGCTACCTGAGGAGTGTTTCACAGAGGCCTGTGTGAAGCGCTGCCCCTGCCTCTATGTGGACATCT
CCCAGGGCCGCGGGAAAATGTGGTGGACACTCCGCAGGGCCTGCTTCAAGATTGTTGAGCACAACTGGTT
TGAGACCTTCATCGTCTTCATGATCTTGCTCAGCAGCGGGGCCCTGGCCTTCGAGGACATCTACATTGAA
CAGCGGCGAGTCATCCAAACCATCCTGGAATATGCTGACAAGGTCTTCACCTACATCTTCATCCTGGAGA
TGCTGCTAAAGTGGGTGGCCTACGGCTTCAAGGTGTACTTCACCAACGCCTGGTGCTGGCTCGACTTCCT
CATTGTGGATGTCTCCATCATCAGTCTGGTGGCTAACTGGCTGGGCTACTCTGAGCTGGGGCCCATCAAA
TCCCTGCGCACGCTCCGGGCCCTGCGACCTCTGAGGGCACTGTCCCGATTTGAAGGCATGAGGGTGGTGG
TGAACGCCCTTCTGGGAGCCATCCCTTCCATCATGAACGTGCTCCTTGTCTGCCTCATCTTCTGGCTCAT
CTTCAGCATCATGGGGGTCAACTTGTTTGCTGGAAAGTTCTACTACTGCATCAACACAACCACCTCCGAG
AGATTCGACATCTCTGTGGTCAACAACAAGTCCGAGTGTGAGAGCCTCATGTACACCGGCCAGGTCCGCT
GGATGAACGTCAAGGTCAACTATGACAACGTGGGTCTCGGCTACCTCTCTCTTCTTCAGGTGGCCACTTT
CAAGGGTTGGATGGACATCATGTATGCAGCTGTGGACTCCCGGGAGAAAGAGGAGCAGCCAGACTACGAG
GTGAACCTCTACATGTACCTTTACTTCGTCATCTTTATCATCTTCGGCTCCTTCTTCACCCTCAATCTCT
TCATTGGCGTCATCATTGACAACTTCAACCAACAGAAGAAGAAGTTTGGAGGGAAAGACATCTTCATGAC
AGAGGAACAGAAGAAATACTACAATGCGATGAAGAAGCTTGGCTCCAAGAAGCCCCAGAAGCCAATCCCC
CGGCCTCAGAACAAGATCCAAGGCATGGTGTACGACTTCGTGACAAAGCAGGTGTTTGACATCTCTATCA
TGATCCTCATCTGCCTCAACATGGTGACGATGATGGTGGAGACGGATGACCAGAGCCAGCTCAAGGTGGA
CATCCTGTATAACATCAACATGGTCTTCATTATCGTCTTCACAGGGGAGTGTGTGCTCAAGATGTTTGCC
CTGCGCCATTACTACTTCACCATTGGCTGGAATATCTTCGACTTCGTGGTTGTCATCTTGTCCATTGTGG
GTCTCGCACTCTCTGACTTGATACAGAAATACTTTGTGTCACCCACACTGTTCCGTGTGATCCGATTGGC
TCGGATCGGGCGTGTCTTGCGTCTGATCCGTGGGGCCAAGGGCATCCGGACGCTGCTGTTCGCCCTGATG
ATGTCCCTGCCCGCCCTCTTCAACATCGGCCTCCTTCTCTTTCTGGTCATGTTCATTTACTCCATCTTCG
GCATGTCTAACTTCGCCTACGTCAAGAAAGAGTCGGGCATCGACGACATGTTCAACTTTGAGACCTTTGG
CAACAGTATCATCTGCCTCTTCGAGATCACCACGTCAGCTGGCTGGGACGGGCTTCTGAACCCCATCCTC
AACAGTGGGCCCCCAGACTGTGACCCGACATTGGAGAACCCAGGCACCAATATCAAGGGTGACTGCGGCA
ACCCATCCATCGGCATCTGTTTCTTCTGCAGCTACATCATCATCTCCTTCCTCATCGTGGTCAACATGTA
CATTGCCATCATCCTAGAGAATTTCAATGTGGCCACTGAAGAGAGCAGTGAGCCCCTCTGTGAGGATGAC
TTCGAGATGTTCTATGAGACCTGGGAGAAGTTTGACCCCGATGCAACTCAGTTCATCGACTACAGCCGCC
TTTCTGACTTTGTGGACACCCTGCAGGAGCCCTTGAAAATTGCCAAGCCCAATAAGATCAAGCTTATCAC
ATTAGACCTGCCCATGGTACCCGGGGACAAGATCCACTGCCTGGACATCCTCTTTGCCCTGACCAAAGAG
GTACTGGGTGACTCTGGGGAAATGGATGCTCTCAAACAGACCATGGAGGAGAAGTTCATGGCAGCTAACC
CCTCCAAGGTCTCCTATGAGCCCATCACCACCACCCTCAAGAGGAAGCAGGAGGAGGTGTGTGCTATCAA
AATCCAGAGGGCTTACCGCCGCCATCTGCTGCAGCGCTCTGTGAAGCAGGCCTCTTACATGTACCGCCAC
AGCCAGGAAGGCAATGGCGATGGGGCCCCTGAGAAGGAGGGATTGCTTGCCAACACCATGAACAAGATGT
ATGGCTCTGAGAAAGAGGACAACGGTGTGCAGAGCCAGGGGGAGAAAGAGAAAGACTCAACAGAGGATGC
TGGACCCACCACGGAGGTCACAGCCCCCAGCAGCTCGGACACTGCCCTGACTCCTCCTCCTCCTTCTCCT
CCTCCACCATCATCACCACCACAAGGGCAGACAGTGCGCCCAGGGGTCAAAGAGTCTCTTGTCTAG

Translation (1841 aa):
MASSSLPTLVPPGPHCLRPFTPESLAAIEQRAMEEEARLQRNKQMEIEEPERKPRSDLEAGKNLPLIYGD
PPPEVIGVPLEDLDPYYSDKKTFIVLNKGKAIFRFSATPALYMLSPFSIVRRVAIKVLIHALFSMFIMIT
ILTNCVFMTMSNPPSWSKDVEYTFTGIYTFESLIKMLARGFCIDDFTFLRDPWNWLDFSVITMAYVTEFV
DLGNISALRTFRVLRALKTITVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKC
VRWPPPMNDTNTTWYGNDTWYGNDTWYGNDTWYGNDTWNSQESWVSNSTFDWEAYINDEGNFYFLEGSND
ALLCGNSSDAGHCPEGYECMKAGRNPNYGYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIF
FVVIIFLGSFYLINLILAVVAMAYAEQNEATLAEDQEKEEEFQQMLEKFKKHQEELEKAKAAQALEGGEE
ADGDPTHSKDCNGSLDTSGEKGPPRPSCSAESAISDAMEELEEAHQKCPPWWYKCAHKVLIWNCCAPWVK
FKHIILLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEHFDNVLSVGNLVFTGIFTAEMVLKLIAMDPYE
YFQQGWNIFDSFIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLV
LAIIVFIFAVVGMQLFGKSYKECVCKIASDCSLPRWHMHDFFHSFLIVFRILCGEWIETMWDCMEVAGQA
MCLTVFLMVMVIGNLVVLNLFLALLLSSFSADSLAASDEDGEMNNLQIAIGRIKWGIAFAKTFLLGLLHG
KILSLKDIMLSLGEPGGAGENGESPPEDEKKEPPPEDGNKELKDNHILNHVGLTDGPRSSIEMDHLNFIN
NPYLTIHVPIASEESDLEMPTEEETDTFSEPEDIKKPLQPLYDGNSSVCSTADYKPPEEDPEEQAEENPE
GELPEECFTEACVKRCPCLYVDISQGRGKMWWTLRRACFKIVEHNWFETFIVFMILLSSGALAFEDIYIE
QRRVIQTILEYADKVFTYIFILEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSIISLVANWLGYSELGPIK
SLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCINTTTSE
RFDISVVNNKSECESLMYTGQVRWMNVKVNYDNVGLGYLSLLQVATFKGWMDIMYAAVDSREKEEQPDYE
VNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIP
RPQNKIQGMVYDFVTKQVFDISIMILICLNMVTMMVETDDQSQLKVDILYNINMVFIIVFTGECVLKMFA
LRHYYFTIGWNIFDFVVVILSIVGLALSDLIQKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALM
MSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDMFNFETFGNSIICLFEITTSAGWDGLLNPIL
NSGPPDCDPTLENPGTNIKGDCGNPSIGICFFCSYIIISFLIVVNMYIAIILENFNVATEESSEPLCEDD
FEMFYETWEKFDPDATQFIDYSRLSDFVDTLQEPLKIAKPNKIKLITLDLPMVPGDKIHCLDILFALTKE
VLGDSGEMDALKQTMEEKFMAANPSKVSYEPITTTLKRKQEEVCAIKIQRAYRRHLLQRSVKQASYMYRH
SQEGNGDGAPEKEGLLANTMNKMYGSEKEDNGVQSQGEKEKDSTEDAGPTTEVTAPSSSDTALTPPPPSP
PPPSSPPQGQTVRPGVKESLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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