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Report for CCDS48478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48478.1 Public Mus musculus 1 Rab3gap2 23 108 98 CCDS HistoryNCBI Gene:98732Re-query CCDS DB by CCDS ID:48478.1Re-query CCDS DB by GeneID:98732See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48478.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069652.7 ENSMUSP00000066325.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069652.7Link to Ensembl Protein Viewer:ENSMUSP00000066325.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069652Re-query CCDS DB by Protein ID:ENSMUSP00000066325
Original member NCBI NM_001163754.1 NP_001157226.1 Updated not alive Link to Nucleotide Sequence:NM_001163754.1Link to Protein Sequence:NP_001157226.1Re-query CCDS DB by Nucleotide ID:NM_001163754Re-query CCDS DB by Protein ID:NP_001157226
Current member NCBI NM_001163754.2 NP_001157226.1 Accepted alive Link to Nucleotide Sequence:NM_001163754.2Link to Protein Sequence:NP_001157226.1Re-query CCDS DB by Nucleotide ID:NM_001163754Re-query CCDS DB by Protein ID:NP_001157226Link to BLAST:NP_001157226.1

Chromosomal Locations for CCDS 48478.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 185204242 185204353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185221845 185221909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185232961 185233084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185234121 185234202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185235304 185235351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185235431 185235506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185235960 185236061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185238779 185238878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185240662 185240760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185246636 185246784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185247844 185247923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185248013 185248102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185249880 185250019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185250933 185251149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185251664 185251807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185252031 185252113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185252316 185252380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185255745 185255835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185258498 185258625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185259314 185259527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185260401 185260498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185261330 185261435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185262679 185262839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185263631 185263859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185266901 185267074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185267173 185267279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185271434 185271500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185272572 185272642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185275912 185275947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185277147 185277221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185278148 185278366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185281651 185281740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185282298 185282510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185283382 185283540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185283847 185283996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4164 nt):
ATGGCCTGCTCCATCGTCCAGTTCTGCTCCTTCCAGGACCTGCAGTCCGCGCGCGACTTCCTATTCCCTC
ACCTGCGGGAGGAGACCCCCGGCGCCCTGAAGAGGGACCCGAGTAAAACATCAAGCTGGGAAGATGATAG
TTGGGGAGCATGGGAAGAGACAGAGCCCCGAGAACCTGAAGAAGAAGGAAATACTTCTAAAACACAAAAA
AATTCCTGGCTTCAAGAATGTGTTTTATCCTTATCTCCAACCAGTGACCTTATGGTTATAGCTCGGGAGC
AGAAGGCCGCATTCCTAGTGCCAAAATGGAAACATGGTGATAAAGGGAAGGAAGAAATGCAGTTTGCTGT
TGGTTGGAGCGGCTCCGTAAGTGCAGAGGAAGGGGAGTATGTAACCAGTGCCCTGTGCATCCCACTGGCG
AGTCAGAAGAGGAGTTCCACTGGGCGCCCTGACTGGACCTGCATTGTGGTGGGCTTCACATCGGGCTATG
TGCGCTTCTACACTGAGAGTGGAGTGCTTTTGCTTGCACAACTTTTGAATGAGGACAAAGTGCTTCAGCT
TAAATGCAGGACCTATGAAATCCCAAGACACCCTGGAGTGACTGAGCAGAATGAAGAACTGAGCATCTTA
TATCCAGCCGCCATTGTGACGATTGATGGATTTAGTCTCTTTCAGTCTCTTCGAGCCTGTCGAAACCAAG
TAGCAAAAGCTGCAGCATCAGGCAATGAGAACATTCAGCCACCACCATTAGCTTATAAGAAATGGGGTCT
TCAAGATATTGACACCATCATCGATCATGCTAGTATTGGTATTATGACTCTGTCACCATTTGATCAAATG
AAGACTGCTTCCAATATAGGTGGATTTAATGCAGCAATTAAAAACAGTCCGCCTGCCATGTCTCAGTACA
TCACTGTGGGCTCCAGTCCGTTCACTGGCTTCTTCTATGCTCTCGAGGGAAGCACGCAGCCTCTGTTGTC
TCACGTCGCGCTCGCTGTTGCAAGTAAGCTGACCTCCGCCCTCTTCAGTGCCGCCAGTGGTTGGCTTGGT
TGGAAAAGCAAGCATGAGGAAGACACTGTCCAGAAGCAGAAGCCCAAGATGGAGCCGGCCACCCCACTAG
CTGTGAGATTTGGACTTCCGGATTCTAGACGCCACGGAGAAAGCATATGCCTGTCTCCTTGTAATACCCT
GGCAGCAGTCACAGATGATTTTGGCAGGGTTATCTTACTGGACGTAGCCCGAGGAATCGCAATACGGATG
TGGAAAGGGTATCGGGATGCGCAGGTCGGATGGATTCAAATTGTAGAGGACCTCCATGAACGAGTGCCAG
AAAAGGGGGGCTTCTCCCCCTTTGGAAATACTCAAGGGCCCAGTCGGGTCGCTCAGTTCCTTGTGATCTA
TGCACCACGAAGGGGGATTCTGGAAGTGTGGAACACACAGCAAGGACCTAGAGTGGGAGCTTTCAACGTG
GGTAAACACTGCAGGCTACTCTATCCTGGCTACAAAATCATGGGCTTAAACAACGTGACAAGTCAGAGTT
GGCAGCCTCAGACTTACCAGATCTGTCTTGTTGACCCTGTGTCTGCAAGCGTGAAGGCGGTGAACGTGCC
TTTCCATCTAGCGCTGAGTGATAAGAAGAGTGAAAGAGCCAAGGACCTGCACTTAGTGAAGAAACTATCA
GCCCTGCTGAGAGCCAAGTCCCCCAGGCCGGATTCATTTGAAACCGAAATAAAGGAGTTGATTCTTGATA
TTAAGTACCCTGCAACCAAGAAACAAGCTCTGGAAAGCATTTTGGCCAGTGACCGTTTATCGTTTTCCTG
CCTTAGAAATGTTACTCAGACTTTAATGGACACTTTAAAAAACCAAGAGCTTGAGTCTGTTGATGAAGGA
CTGCTACAGTTTTGTGCCAGTAAATTAAAACTACTACATCTTTATGAATCTGTCAGTCAGTTAAATACGC
TTGACTTTCACTCAGACACCCCGTTCTCTGATAATGATCTGGCTGTCTTGCTAAGGCTGGATGATAAGGA
ACTCCTGAAACTCCGGGCCTTGTTAGAGAAATATAAACAAGAAAACACCAAAGCCACCGTGCGCTTTTCT
GAGGATGCAGACAGAGTGCTACCTGTCAAGACCTTCCTGGAGTATCTAGAGTATGAGAAGGATGCACTGA
GCATAAGGAAGGTCGGAGAGGAGGAGTGTGTGGCTCTAGGCAGTTTCTTTTTCTGGAAGTGTTTGCATGG
AGAAAGCTCCACTGAAGAGATGTGCCACAGCCTGGAGTCGGCTGGACTCAGCCCTCAGCAGTTACTGTCT
CTGCTCCTAAGTGTTTGGCTTTCGAAGGAAAAAGACATTTTGGACAAACCACAGTCTGTCTGCTGCCTTC
ATACCATGCTGTCCCTGCTGAGCAAGATGAAAGTGGCCATCGATGAGACGTGGGATTCTCAGTCTGTGTC
CCCCTGGTGGCAGCAGATGCGCATGGCCTGCATCCAGTCAGAGAACAGCGGCGCTGCCCTGCTGTCTGCA
CATGTGGGGCATTCTGTGGCCGCACAGATGTCCAGCGGTGCTACAGATAAGAAATTTTCCCAGATGGTGT
TGGATGCAGATGCCGAAGCCCTCACGGACTCCTGGGAAGCTCTCTCTCTGGACACGGAGTACTGGAAGCT
CCTGCTGAGACAGCTGGAGGACTGCCTCATACTCCAGACTCTGCTGCATAGCAAATTGAGCCCCCCAGCC
GCCAAAGCACCATCTCTGCAGTCGGAGCCACTGCCAAGGCTTTCTGTTAAAAAGCTGTTAGAAGGGGGGA
AAGGTGGTATTGCAGACAGTGTAGCCAAGTGGATATTTAAACAGGACCTCAGCCCTGAATTGTTGAAATG
TGCCAACAAAGAGAGAGATGTAGAAAATCCAGACGAACCCAGAGAAGGTATTACACGAAGTTTCCCTGAG
GTGTCAGAGGTGGAGATAGACCTAGGAGCCGTACCAGACTTGCTCCACCTGGCCTACGAGCAGTTCCCTT
GTAGCCTTGAGCTTGATGTGCTGCACGCCCACTGCTGCTGGGAGTATGTGGTTCAGTGGAACAAAGACCC
GGAGGAAGCTCGCTTTTTGGTTAGATCCATAGAACACTTGAAGCACATTCTTAATCCACACGTTCAAAAT
GGTATCGCGCTGATGATGTGGAATACGTTCTTGGTGAAAAGGTTTTCTGCTGCTACTTACCTAATGGATA
AGGTTGGGAAATCTCCAAAGGATAGGTTGTGCCGAAGGGATGTGGGGATGAGCGACACGGCGCTGACATC
CTTCCTCGGCTCCTGCCTGGAACTTCTTCAGACGTCATTGGAGGCTGACATTAGCAGGGATGAAGTCCAG
GTGCCCGTCCTGGACACTGAGGACGCCTGGCTGTCCGTGGAAGGCCCCATCTCTATAGTGGAGCTGGCGC
TGGAGCAGAAGCCTATCCACTACCCACTGGTGGAGCACCATTCCGTCCTGTGCTCCATCCTGTACGCGTC
CATGCGCTTTTCTCTGAAGAGTGTGAAGCCACTCGCCCTTTTTGACAGCAAGGGAAAGAATGCATTTTTT
AAGGATTTAACTTCAATTCAGTTATTACCTAGTGGGGAAATGGATCCAAATTTTATTTCAGTAAGACAAC
AGTTCTTACTGAAAGTTGTCAGTGCAGCTGTCCAGGCTCAGCATTCCAAGGACAAAGATCCCTCTGCAGA
AGCAGCAAACACTCATTGGAAAGACCTCAACTGGCCAGGTTTGGCTGTGGACTTAGCCCATCACCTTCAA
GTGAGCGACGATGTCATTCGAAGGCACTATGTGGGGGAGCTGTACAGCCATGGAGCTGACCTCTTAGGAG
AGGAGGCCATTTTTCAAGTTCAGGACAAAGAAGTTCTGGCGTCTCAGCTGCTAGTGCTGACCGGGCAAAG
GCTGGCTCACGCGCTTTTCCACACCCAGACGAAGGAAGGCATGGAGCTGCTGGCCAGACTCCCGCCCACA
CTCTGCACCTGGCTGAAGGCAATGAACCCTCAGGATCTTCAGAACACTGGCGTGCCTATTGCAGCAACAG
CTAAACTCGTGCATAAAGTGATGGAGCTCCTGCCAGAGAAGCACGGGCAGTACAGCCTCGCCTTACACCT
CATCGATGCCGTGGAAGCCATGGCGACTTTATGA

Translation (1387 aa):
MACSIVQFCSFQDLQSARDFLFPHLREETPGALKRDPSKTSSWEDDSWGAWEETEPREPEEEGNTSKTQK
NSWLQECVLSLSPTSDLMVIAREQKAAFLVPKWKHGDKGKEEMQFAVGWSGSVSAEEGEYVTSALCIPLA
SQKRSSTGRPDWTCIVVGFTSGYVRFYTESGVLLLAQLLNEDKVLQLKCRTYEIPRHPGVTEQNEELSIL
YPAAIVTIDGFSLFQSLRACRNQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDHASIGIMTLSPFDQM
KTASNIGGFNAAIKNSPPAMSQYITVGSSPFTGFFYALEGSTQPLLSHVALAVASKLTSALFSAASGWLG
WKSKHEEDTVQKQKPKMEPATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRM
WKGYRDAQVGWIQIVEDLHERVPEKGGFSPFGNTQGPSRVAQFLVIYAPRRGILEVWNTQQGPRVGAFNV
GKHCRLLYPGYKIMGLNNVTSQSWQPQTYQICLVDPVSASVKAVNVPFHLALSDKKSERAKDLHLVKKLS
ALLRAKSPRPDSFETEIKELILDIKYPATKKQALESILASDRLSFSCLRNVTQTLMDTLKNQELESVDEG
LLQFCASKLKLLHLYESVSQLNTLDFHSDTPFSDNDLAVLLRLDDKELLKLRALLEKYKQENTKATVRFS
EDADRVLPVKTFLEYLEYEKDALSIRKVGEEECVALGSFFFWKCLHGESSTEEMCHSLESAGLSPQQLLS
LLLSVWLSKEKDILDKPQSVCCLHTMLSLLSKMKVAIDETWDSQSVSPWWQQMRMACIQSENSGAALLSA
HVGHSVAAQMSSGATDKKFSQMVLDADAEALTDSWEALSLDTEYWKLLLRQLEDCLILQTLLHSKLSPPA
AKAPSLQSEPLPRLSVKKLLEGGKGGIADSVAKWIFKQDLSPELLKCANKERDVENPDEPREGITRSFPE
VSEVEIDLGAVPDLLHLAYEQFPCSLELDVLHAHCCWEYVVQWNKDPEEARFLVRSIEHLKHILNPHVQN
GIALMMWNTFLVKRFSAATYLMDKVGKSPKDRLCRRDVGMSDTALTSFLGSCLELLQTSLEADISRDEVQ
VPVLDTEDAWLSVEGPISIVELALEQKPIHYPLVEHHSVLCSILYASMRFSLKSVKPLALFDSKGKNAFF
KDLTSIQLLPSGEMDPNFISVRQQFLLKVVSAAVQAQHSKDKDPSAEAANTHWKDLNWPGLAVDLAHHLQ
VSDDVIRRHYVGELYSHGADLLGEEAIFQVQDKEVLASQLLVLTGQRLAHALFHTQTKEGMELLARLPPT
LCTWLKAMNPQDLQNTGVPIAATAKLVHKVMELLPEKHGQYSLALHLIDAVEAMATL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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