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Report for CCDS48450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48450.1 Public Mus musculus 1 Ifi213 23 108 98 CCDS HistoryNCBI Gene:623121Re-query CCDS DB by CCDS ID:48450.1Re-query CCDS DB by GeneID:623121See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097462.8 ENSMUSP00000095070.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097462.8Link to Ensembl Protein Viewer:ENSMUSP00000095070.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097462Re-query CCDS DB by Protein ID:ENSMUSP00000095070
Original member Current member EBI ENSMUST00000180215.1 ENSMUSP00000136238.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180215.1Link to Ensembl Protein Viewer:ENSMUSP00000136238.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180215Re-query CCDS DB by Protein ID:ENSMUSP00000136238
Original member Current member NCBI NM_001177349.2 NP_001170820.1 Accepted alive Link to Nucleotide Sequence:NM_001177349.2Link to Protein Sequence:NP_001170820.1Re-query CCDS DB by Nucleotide ID:NM_001177349Re-query CCDS DB by Protein ID:NP_001170820Link to BLAST:NP_001170820.1
Original member Current member NCBI NM_001177350.2 NP_001170821.1 Accepted alive Link to Nucleotide Sequence:NM_001177350.2Link to Protein Sequence:NP_001170821.1Re-query CCDS DB by Nucleotide ID:NM_001177350Re-query CCDS DB by Protein ID:NP_001170821Link to BLAST:NP_001170821.1

Chromosomal Locations for CCDS 48450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173593914 173594044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173595021 173595297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGACTGGAGAGATGGTGAATTACTGCAAGCAAATTGTTCTTCTCTCTGGATTAGAATATATGAATGACT
AT
AACTTTAGAGCACTTAAGTCCTTACTGAACCATGACCTAAAACTGACTAAGAACATGCAAGATGATTA
T
GACAGAATTAACATTGCTGACTTAATGGAAGAAAAGTTCCCAGAGGATGCTGGATTGAGCAAACTGATA
GAA
GTATGTGAAGACATTCCAGAACTTGCAGCTCGTGTTGATATACTTAGAAAAGAGATGGAGAAAGTTA
AA
AATAAAACCAAAATAAAATCAGAATCCAGCCCTCCTCCACTTACCTCCAGCCTGATGGAAGCTTGGGA
A
GTAGAACCAGCTATGGTGACAGCTTCATCAGAGGTACACCGTCTAAGATCTCACTGA


Translation (135 aa):
MTGEMVNYCKQIVLLSGLEYMNDYNFRALKSLLNHDLKLTKNMQDDYDRINIADLMEEKFPEDAGLSKLI
E
VCEDIPELAARVDILRKEMEK
VKNKTKIKSESSPPPLTSSLMEAWEVEPAMVTASSEVHRLRSH



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser