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Report for CCDS48373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48373.1 Public Mus musculus 1 Rnpep 23 108 98 CCDS HistoryNCBI Gene:215615Re-query CCDS DB by CCDS ID:48373.1Re-query CCDS DB by GeneID:215615See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48373.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074357.7 ENSMUSP00000073962.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074357.7Link to Ensembl Protein Viewer:ENSMUSP00000073962.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000074357Re-query CCDS DB by Protein ID:ENSMUSP00000073962
Original member Current member NCBI NM_001159624.1 NP_001153096.1 Accepted alive Link to Nucleotide Sequence:NM_001159624.1Link to Protein Sequence:NP_001153096.1Re-query CCDS DB by Nucleotide ID:NM_001159624Re-query CCDS DB by Protein ID:NP_001153096Link to BLAST:NP_001153096.1

Chromosomal Locations for CCDS 48373.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 135262971 135263129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135264053 135264195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135265183 135265407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135266870 135266978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135267170 135267282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135268083 135268196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135271529 135271764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135277389 135277537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135278767 135278907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135283562 135284008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGGAGAGCGGCGGACCAGGCAACTACAGCGCGGCCGCCCGGCGGCCACTGCACTCGGCCCAAGCCGTGG
AC
GTGGCCTCGGCCTCCAGCTTCCGCGCCTTCGAGATCCTGCACCTGCACCTGGACCTGCGGGCCGAGTT
C
GGGCCTCCGGGCCCGGGTCCGGGAAGCCGCGGATTGAGCGGCACGGCGACGCTGGAGCTGCGTTGTTTG
CTT
CCCGAGGGCGCCTCGGAGCTGCGGCTCGACTCGCACAGCTGCTTGGAGGTGACGGCGGCGACGCTGC
GA
CGGGGACAGCCGGGAGACCAGCAGGCGCCGGCAGAGCCCGTGCCTTTCCACACACAGCCCTTCTCGCA
C
TATGGCCAGGCCCTGTGCGTGGCCTTCCGGCAGCCCTGCGGTGCCGCCGATCGCTTCGAGCTGGAGCTC
ACC
TACCGCGTCGGGGAGGGACCCGGGGTTTGCTGGTTGGCTCCTGAGCAGACAGCAGGAAAGAAGAAAC
CC
TTTGTCTATACCCAGGGTCAGGCGGTCTTAAACCGAGCCTTTTTCCCTTGCTTTGACACTCCAGCAGT
G
AAATGCACGTATTCGGCTCTTATTGAGGTTCCAGATGGCTTCACAGCTGTGATGAGTGCAGACACCTGG
GAG
AAGAGAGGACCAAATAAGTTCTTCTTCCAGATGAGCCATCCCATCCCCTCCTATCTGATAGCTTTGG
CC
ATTGGAGATCTGGCTTCAGCTGAGGTTGGACCCAGGTATGACTTGCTCTTTATGCCACCGTCCTTTCC
A
TTTGGAGGAATGGAAAATCCTTGCCTGACCTTTGTCACTCCGTGCCTGCTAGCAGGGGACCGCTCGTTA
GCC
GACGTTATCATCCATGAGATCTCCCACAGTTGGTTTGGGAACCTGGTCACCAATGCCAACTGGGGGG
AG
TTCTGGCTCAATGAAGGCTTCACCATGTATGCCCAGAGGAGGATCTCCACCATCCTGTTTGGAGCTGC
T
TACACTTGCTTGGAGGCTGCCACAGGGAGGGCTCTGCTGCGTCAGCACATGAATGTCTCCGGAGAGGAA
AAC
CCACTCAACAAGCTCCGGGTGAAGATTGAACCAGGTGTGGACCCCGATGACACCTACAATGAGACCC
CC
TACGAGAAAGGTTACTGCTTTGTCTCATACCTGGCCCACCTGGTGGGTGATCAGGATCAGTTTGACAA
G
TTTCTCAAGGCCTATGTAGATGAGTTTAAATTCCAAAGTATCTTGGCTGAAGACTTTCTGGAATTCTAC
CTG
GAGTATTTCCCTGAGTTGAAGAAGAAGGGAGTAGATTCCATTCCAGGTTTTGAGTTTGATCGATGGC
TG
AACACCCCTGGATGGCCCCCCTACCTCCCCGACCTCTCCCCTGGGGACTCACTCATGAAGCCAGCTGA
A
GAGCTGGCAGAACTGTGGGTGACCTCAGAGCCAGACATGCAAGCCATTGAAGCCGTGGCCATCTCTACC
TGG
AAGACCTACCAGCTTGTCTACTTCCTAGATAAGATCTTGCAGAAGTCTCCTCTCCCTCCTGGGAATG
TG
AAAAAACTTGGGGAGACATACCCAAAGATTTCCAATGCTCAGAATGCTGAGTTACGGCTAAGATGGGG
C
CAAATCATCCTTAAGAATGACTACCAAGAGGAATTCCAGAAAGTGAAGGACTTCCTGCAGAGCCAGGGA
AAG
CAGAAGTACACTCTGCCTCTGTACCACGCCATGATGGGTGGCAGTGAGATGGCCCGGACCCTGGCCA
AG
GACACCTTTGCCGCCACTGCTTCCCAGCTCCACAGCAACGTCGTCAACTATGTCCAGCAGATCCTGGC
G
CCCAAGGACAGTTAG


Translation (611 aa):
MESGGPGNYSAAARRPLHSAQAVDVASASSFRAFEILHLHLDLRAEFGPPGPGPGSRGLSGTATLELRCL
L
PEGASELRLDSHSCLEVTAATLRRGQPGDQQAPAEPVPFHTQPFSHYGQALCVAFRQPCGAADRFELEL
T
YRVGEGPG
VCWLAPEQTAGKKKPFVYTQGQAVLNRAFFPCFDTPAVKCTYSALIEVPDGFTAVMSADTW
E
KRGPNKFFFQMSHPIPSYLIALAIGDLASAEVGP
RYDLLFMPPSFPFGGMENPCLTFVTPCLLAGDRSL
A
DVIIHEISHSWFGNLVTNANWGEFWLNEGFTMYAQRRISTILF
GAAYTCLEAATGRALLRQHMNVSGEE
N
PLNKLRVKIEP
GVDPDDTYNETPYEKGYCFVSYLAHLVGDQDQFDKFLKAYVDEFKFQSILAEDFLEFY
L
EYFPELKKKGVDSIP
GFEFDRWLNTPGWPPYLPDLSPGDSLMKPAEELAELWVTSEPDMQAIEAVAIST
W
KTYQLVYFLDKILQKSPLPP
GNVKKLGETYPKISNAQNAELRLRWGQIILKNDYQEEFQKVKDFLQSQG
K
QKYTLPLYHAMMGGSEMARTLAKDTFAATASQLHSNVVNYVQQILAPKDS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser