NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, August 18, 2026, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48234.1 Public Mus musculus 1 Semp2l1 23 108 98 CCDS HistoryNCBI Gene:408191Re-query CCDS DB by CCDS ID:48234.1Re-query CCDS DB by GeneID:408191See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48234.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171322.2 ENSMUSP00000132789.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171322.2Link to Ensembl Protein Viewer:ENSMUSP00000132789.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171322Re-query CCDS DB by Protein ID:ENSMUSP00000132789
Original member Current member NCBI NM_001164286.1 NP_001157758.1 Accepted alive Link to Nucleotide Sequence:NM_001164286.1Link to Protein Sequence:NP_001157758.1Re-query CCDS DB by Nucleotide ID:NM_001164286Re-query CCDS DB by Protein ID:NP_001157758Link to BLAST:NP_001157758.1

Chromosomal Locations for CCDS 48234.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 32545391 32546827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGAGAAGAAGCCCGAAGCTTCAGGAAAAGGGCAAAAGAGAAAACACCAAGATGAAAGTAGGATCGAGA
TAGATTCTGAAGCTTTGGGACAAGATCCAAAAAGGAAATGCCAGGATGGAACAACGATGGTATTTAAGGT
GCCTGGCAAGGCTCAAAAGATGACCCCTCAGGAGCCTCCAGACCTAGAGCTTGCTATAGAACAGTTTAGT
AAGGGTCAGGTACGGAAATCCCAGGGAGAGACTCCAAACCAACCAAAACCCCTAGAGTTGACCGAAGGTC
CTCCAGAGCAGGTTGTAACAGGAAGGGCGCCTGCTGATAGTGGCAAGGGTCACAAGCGGCCCTATTCTGC
CATGGAGGAAAACGAACAAATCCCCCAAAAGGAAAAGAAAAGAAGGTTGCTTCAAAACCTTAAGCTAATC
CTTATAAAGGCTGGGAAGATCAAAGGGGGCGAGTCAGAAGACAGTCATGGATCAGAAACAACTCTTAGAG
ATCCAGAACCATCTACTGTTGTGGCTCTAAAAGAATGTCTTTCACCAGACGAGAGAGAAAAGTGTTGTTT
TGAGGAGACATCTGTTACAGAGAAGAAAGGTTGTGTAAAGGTTGAAGGAAGAAGGGGGAATAGCTTGGAG
CCTGGAACACAGGCTCAGATCATCCTGGATAGCAGCAGAGGCAATAGCTTACTCCCCAACAAGATGGCAG
TACTTGCAGCACAGAAAAAGCCTCTCAGAGACCACGAAAAGCACAGAGAAATGGATCAAATCCTTGATAT
TACAGAGGACATGGAGAAGGAAATTGAGAATGCACTGGGTCCAGGACCCCAAGAGGAAATCCTAAGTTCC
AGATTTAAGTTGCTAATCACCAGAGGAGATATCCAGACCCTGAAGAATGGTCAGTGGCTCAATGATGAGG
TCATCAATTTCTACATGAACCTGCTGGTTGAGAGAAATGAAAACCAAGGCTACCCGGCTCTGCATGTCTT
TAGCACTTTCTTTTACCCCAAGCTAAAGCATAGTGGTTACAGTTCTGTGAAAAGATGGACTCGAGGCATC
AATCTCTTTGAAAAAGAACTCATCTTGGTGCCTATTCACCAGAGGTTACATTGGAGCCTGGTGGTAATCG
ATTTAAGGAAACAAAGTATTGCATACTTCGATTCCATCGGACAGACAGGGAAGTCTATCTGTGAGACCAT
CTTCCAATATTTACAAAATGAGAGCAAGACCCGCAGGAACATTGAGCTGGACCCTTTGGAGTGGAAGCAG
TACAGTATGGCATCAGAGGAGATTCCTCTGCAAATGAATGGGAGTGACTGTGGAATGTTTACCTGTAAAT
ATGCAGATTACATCGCTAGGGACCAGCCTGTGACCTTTTCTCAGCAACACATGCCCACCTTCAGGAAGAG
GATGGTCTGGGAAATCCTGCACAGCCAGTTACTGTAA

Translation (478 aa):
MEKKPEASGKGQKRKHQDESRIEIDSEALGQDPKRKCQDGTTMVFKVPGKAQKMTPQEPPDLELAIEQFS
KGQVRKSQGETPNQPKPLELTEGPPEQVVTGRAPADSGKGHKRPYSAMEENEQIPQKEKKRRLLQNLKLI
LIKAGKIKGGESEDSHGSETTLRDPEPSTVVALKECLSPDEREKCCFEETSVTEKKGCVKVEGRRGNSLE
PGTQAQIILDSSRGNSLLPNKMAVLAAQKKPLRDHEKHREMDQILDITEDMEKEIENALGPGPQEEILSS
RFKLLITRGDIQTLKNGQWLNDEVINFYMNLLVERNENQGYPALHVFSTFFYPKLKHSGYSSVKRWTRGI
NLFEKELILVPIHQRLHWSLVVIDLRKQSIAYFDSIGQTGKSICETIFQYLQNESKTRRNIELDPLEWKQ
YSMASEEIPLQMNGSDCGMFTCKYADYIARDQPVTFSQQHMPTFRKRMVWEILHSQLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH