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Report for CCDS48009.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48009.2 Public Homo sapiens 9 ASTN2 24 110 108 CCDS HistoryNCBI Gene:23245Re-query CCDS DB by CCDS ID:48009.2Re-query CCDS DB by GeneID:23245See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 48009.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 48009.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288520.9 ENSP00000288520.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000288520.9Link to Ensembl Protein Viewer:ENSP00000288520.5Re-query CCDS DB by Nucleotide ID:ENST00000288520Re-query CCDS DB by Protein ID:ENSP00000288520
Original member Current member NCBI NM_198186.3 NP_937829.3 Accepted alive Link to Nucleotide Sequence:NM_198186.3Link to Protein Sequence:NP_937829.3Re-query CCDS DB by Nucleotide ID:NM_198186Re-query CCDS DB by Protein ID:NP_937829Link to BLAST:NP_937829.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937829.3 440 O75129-4 440 100% 0 0

Chromosomal Locations for CCDS 48009.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 116425851 116426088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116440609 116440792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116442453 116442553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116487359 116487500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116618324 116618472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116620310 116620443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116651528 116651793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116686697 116686805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGAACACATTGCTCTGTAAAGGAATGTTTTGCCTACTCAGCTGGGAGGCCGACAGCAGAGGCAGACTTG
GGGAGTACACTCTGCAGCCCCTGTCCCTGCAGACTGAAGAGACCACAGAGCTGGGCAGCAAGAAGGAGCT
CAAGTCCATGCCCTTCATCACCTACCTCTCAGGTTTGCTGACAGCCCAGATGCTGTCAGATGACCAGCTC
ATTTCAGGTGTGGAGATTCGCTGTGAGGAGAAGGGGCGCTGTCCATCTACCTGTCACCTTTGCCGCCGGC
CAGGCAAGGAGCAGCTGAGCCCCACACCAGTGCTGCTGGAAATCAACCGTGTGGTGCCACTTTATACCCT
CATCCAAGACAATGGCACAAAGGAGGCCTTCAAGAGTGCACTGATGAGTTCCTACTGGTGCTCAGGGAAA
GGGGATGTGATCGATGACTGGTGCAGGTGTGACCTCAGCGCCTTTGATGCCAATGGGCTCCCCAACTGCA
GCCCCCTTCTGCAGCCGGTGCTGCGGCTGTCCCCAACAGTGGAGCCCTCCAGTACTGTGGTCTCCTTGGA
GTGGGTGGATGTTCAGCCAGCTATTGGGACCAAGGTCTCCGACTATATTCTGCAGCATAAGAAAGTGGAT
GAATACACAGACACTGACCTGTACACAGGAGAATTCCTGAGTTTTGCTGATGACTTACTCTCTGGCCTGG
GCACATCTTGTGTAGCAGCTGGTCGAAGCCATGGAGAGGTCCCTGAAGTCAGTATCTACTCAGTCATCTT
CAAGTGTCTGGAGCCCGACGGTCTCTACAAGTTCACTCTGTATGCTGTGGATACACGAGGGAGGCACTCA
GAGCTAAGCACGGTGACCCTGAGGACGGCCTGTCCACTGGTAGATGACAACAAGGCAGAAGAAATAGCTG
ACAAGATCTACAATCTGTACAATGGGTACACAAGTGGAAAGGAGCAGCAGATGGCCTACAACACACTGAT
GGAGGTCTCAGCCTCGATGCTGTTCCGAGTCCAGCACCACTACAACTCTCACTATGAAAAGTTTGGCGAC
TTCGTCTGGAGAAGTGAGGATGAGCTGGGGCCCAGGAAGGCCCACCTGATTCTACGGCGACTGGAGAGGG
TGAGTAGCCACTGCTCCAGCCTCCTGCGGAGTGCCTACATCCAGAGCCGCGTGGAAACAGTGCCCTATCT
TTTCTGCCGCAGCGAGGAGGTCCGGCCTGCAGGCATGGTGTGGTATAGCATCCTCAAGGACACCAAAATC
ACGTGTGAGGAGAAGATGGTGTCAATGGCCCGAAACACGTACGGGGAGTCCAAGGGCCGGTGA

Translation (440 aa):
MNTLLCKGMFCLLSWEADSRGRLGEYTLQPLSLQTEETTELGSKKELKSMPFITYLSGLLTAQMLSDDQL
ISGVEIRCEEKGRCPSTCHLCRRPGKEQLSPTPVLLEINRVVPLYTLIQDNGTKEAFKSALMSSYWCSGK
GDVIDDWCRCDLSAFDANGLPNCSPLLQPVLRLSPTVEPSSTVVSLEWVDVQPAIGTKVSDYILQHKKVD
EYTDTDLYTGEFLSFADDLLSGLGTSCVAAGRSHGEVPEVSIYSVIFKCLEPDGLYKFTLYAVDTRGRHS
ELSTVTLRTACPLVDDNKAEEIADKIYNLYNGYTSGKEQQMAYNTLMEVSASMLFRVQHHYNSHYEKFGD
FVWRSEDELGPRKAHLILRRLERVSSHCSSLLRSAYIQSRVETVPYLFCRSEEVRPAGMVWYSILKDTKI
TCEEKMVSMARNTYGESKGR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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