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Report for CCDS47956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47956.1 Public Homo sapiens 9 APTX 24 110 108 CCDS HistoryNCBI Gene:54840Re-query CCDS DB by CCDS ID:47956.1Re-query CCDS DB by GeneID:54840See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 47956.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379817.7 ENSP00000369145.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379817.7Link to Ensembl Protein Viewer:ENSP00000369145.2Re-query CCDS DB by Nucleotide ID:ENST00000379817Re-query CCDS DB by Protein ID:ENSP00000369145
Original member Current member EBI ENST00000379819.6 ENSP00000369147.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379819.6Link to Ensembl Protein Viewer:ENSP00000369147.2Re-query CCDS DB by Nucleotide ID:ENST00000379819Re-query CCDS DB by Protein ID:ENSP00000369147
Original member Current member EBI ENST00000463596.6 ENSP00000419846.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000463596.6Link to Ensembl Protein Viewer:ENSP00000419846.1Re-query CCDS DB by Nucleotide ID:ENST00000463596Re-query CCDS DB by Protein ID:ENSP00000419846
Original member Current member NCBI NM_001195248.2 NP_001182177.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195248.2Link to Protein Sequence:NP_001182177.2Re-query CCDS DB by Nucleotide ID:NM_001195248Re-query CCDS DB by Protein ID:NP_001182177Link to BLAST:NP_001182177.2
Original member Current member NCBI NM_001195249.2 NP_001182178.1 Accepted alive Link to Nucleotide Sequence:NM_001195249.2Link to Protein Sequence:NP_001182178.1Re-query CCDS DB by Nucleotide ID:NM_001195249Re-query CCDS DB by Protein ID:NP_001182178Link to BLAST:NP_001182178.1
Original member Current member NCBI NM_001368995.1 NP_001355924.1 Accepted alive Link to Nucleotide Sequence:NM_001368995.1Link to Protein Sequence:NP_001355924.1Re-query CCDS DB by Nucleotide ID:NM_001368995Re-query CCDS DB by Protein ID:NP_001355924Link to BLAST:NP_001355924.1
Original member Current member NCBI NM_001368996.1 NP_001355925.1 Accepted alive Link to Nucleotide Sequence:NM_001368996.1Link to Protein Sequence:NP_001355925.1Re-query CCDS DB by Nucleotide ID:NM_001368996Re-query CCDS DB by Protein ID:NP_001355925Link to BLAST:NP_001355925.1
Original member Current member NCBI NM_001368997.1 NP_001355926.1 Accepted alive Link to Nucleotide Sequence:NM_001368997.1Link to Protein Sequence:NP_001355926.1Re-query CCDS DB by Nucleotide ID:NM_001368997Re-query CCDS DB by Protein ID:NP_001355926Link to BLAST:NP_001355926.1
Original member Current member NCBI NM_001368998.1 NP_001355927.1 Accepted alive Link to Nucleotide Sequence:NM_001368998.1Link to Protein Sequence:NP_001355927.1Re-query CCDS DB by Nucleotide ID:NM_001368998Re-query CCDS DB by Protein ID:NP_001355927Link to BLAST:NP_001355927.1
Original member Current member NCBI NM_175073.3 NP_778243.1 Accepted alive Link to Nucleotide Sequence:NM_175073.3Link to Protein Sequence:NP_778243.1Re-query CCDS DB by Nucleotide ID:NM_175073Re-query CCDS DB by Protein ID:NP_778243Link to BLAST:NP_778243.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182177.2 342 Q7Z2E3-7 342 100% 0 0
NP_001182178.1 342 Q7Z2E3-7 342 100% 0 0
NP_001355924.1 342 Q7Z2E3-7 342 100% 0 0
NP_001355925.1 342 Q7Z2E3-7 342 100% 0 0
NP_001355926.1 342 Q7Z2E3-7 342 100% 0 0
NP_001355927.1 342 Q7Z2E3-7 342 100% 0 0
NP_778243.1 342 Q7Z2E3-7 342 100% 0 0

Chromosomal Locations for CCDS 47956.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 32973498 32973652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32974458 32974561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32984631 32984857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32985971 32986030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32987544 32987846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32988083 32988129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32989759 32989891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGATGCGGGTGTGCTGGTTGGTGAGACAGGACAGCCGGCACCAGCGAATCAGACTTCCACATTTGGAAG
CAGTTGTGATTGGGCGTGGCCCAGAGACCAAGATCACTGATAAGAAATGTTCTCGACAGCAAGTACAGTT
GAAAGCAGAGTGTAACAAGGGATATGTCAAGGTAAAGCAGGTAGGAGTCAATCCCACCAGCATTGACTCA
GTCGTAATTGGGAAGGACCAAGAGGTGAAGCTGCAGCCTGGCCAGGTTCTCCACATGGTGAATGAACTTT
ATCCATATATTGTAGAGTTTGAGGAAGAGGCAAAGAACCCTGGCCTGGAAACACACAGGAAGAGAAAGAG
ATCAGGCAACAGTGATTCTATAGAAAGGGATGCTGCTCAGGAAGCTGAGGCTGGGACAGGGCTGGAACCT
GGGAGCAACTCTGGCCAATGCTCTGTGCCCCTAAAGAAGGGAAAAGATGCACCTATCAAAAAGGAATCCC
TGGGCCACTGGAGTCAAGGCTTGAAGATTTCTATGCAGGACCCCAAAATGCAGGTTTACAAAGATGAGCA
GGTGGTGGTGATAAAGGATAAATACCCAAAGGCCCGTTACCATTGGCTGGTCTTACCGTGGACCTCCATT
TCCAGTCTGAAGGCTGTGGCCAGGGAACACCTTGAACTCCTTAAGCATATGCACACTGTGGGGGAAAAGG
TGATTGTAGATTTTGCTGGGTCCAGCAAACTCCGCTTCCGATTGGGCTACCACGCCATTCCGAGTATGAG
CCATGTACATCTTCATGTGATCAGCCAGGATTTTGATTCTCCTTGCCTTAAAAACAAAAAACATTGGAAT
TCTTTCAATACAGAATACTTCCTAGAATCACAAGCTGTGATCGAGATGGTACAAGAGGCTGGTAGAGTAA
CTGTCCGAGATGGGATGCCTGAGCTCTTGAAGCTGCCCCTTCGTTGTCATGAGTGCCAGCAGCTGCTGCC
TTCCATTCCTCAGCTGAAAGAACATCTCAGGAAGCACTGGACACAGTGA

Translation (342 aa):
MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDS
VVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEP
GSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSI
SSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWN
SFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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