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Report for CCDS47203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47203.1 Public Homo sapiens 5 CCDC152 24 110 108 CCDS HistoryNCBI Gene:100129792Re-query CCDS DB by CCDS ID:47203.1Re-query CCDS DB by GeneID:100129792See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47203.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361970.10 ENSP00000354888.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361970.10Link to Ensembl Protein Viewer:ENSP00000354888.5Re-query CCDS DB by Nucleotide ID:ENST00000361970Re-query CCDS DB by Protein ID:ENSP00000354888
Original member Current member NCBI NM_001134848.2 NP_001128320.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001134848.2Link to Protein Sequence:NP_001128320.1Re-query CCDS DB by Nucleotide ID:NM_001134848Re-query CCDS DB by Protein ID:NP_001128320Link to BLAST:NP_001128320.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128320.1 254 Q4G0S7-1 254 100% 0 0

Chromosomal Locations for CCDS 47203.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 42759122 42759208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42762443 42762548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42769597 42769665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42779458 42779522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42783474 42783576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42796829 42796956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42799375 42799458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42799659 42799781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGACCAAAGCAGTGAAGGATGTATGAAAAAGATTAGCAGTGTGAATCTTGACAAACTTATAAATGACT
TCTCACAGATAGAAAAGAAAATGGTAGAAACCAATGGAAAGAACAATATACTGGATATTCAGTTGGAAAA
AAGTAATTGCCTATTAAAAGTAATGCAAGCAAAGGAGGTCTCCATTAAAGAAGAATGTGCTACTCTTCAT
AATATAATAAAAGGGCTACAACAGACCATTGAATATCAACAGAATTTGAAAGGTGAAAATGAACAACTAA
AAATAAGTGCTGATCTTATAAAAGAGAAGTTAAAGTCTCATGAACAGGAATATAAGAATAATATTGCCAA
ACTTGTAAGTGAAATGAAAATCAAAGAGGAGGGATATAAGAAAGAAATAAGCAAACTTTATCAGGACATG
CAGAGAAAAGTTGAATTAAATGAAGAAAAGCACAAAGAACTAATAGAGAAAAAGGAGATGGAAATTTCAG
AGTTAAATGCAAAGCTAAGAAGTCAAGAAAAAGAAAAACAAAATGAAATAATCAAGCTACAACTAGAATT
TGATGCCAAACTAGCAAGAGTTCAGACTAAATCAAAATCATATCAGGATTCTACTGTTTTGCCACAAAGT
ATCTACAGAAGGAAACTTCAGCATTTTCAAGAAGAAAAAAACAAGGAGATTGCAATTCTTCGTAATACCA
TTCGCGATTTAGAGCAACGCCTTTCTGTTGGCAAAGATTCTCACCTTAAGCGTAGACGGTTTTGA

Translation (254 aa):
MDQSSEGCMKKISSVNLDKLINDFSQIEKKMVETNGKNNILDIQLEKSNCLLKVMQAKEVSIKEECATLH
NIIKGLQQTIEYQQNLKGENEQLKISADLIKEKLKSHEQEYKNNIAKLVSEMKIKEEGYKKEISKLYQDM
QRKVELNEEKHKELIEKKEMEISELNAKLRSQEKEKQNEIIKLQLEFDAKLARVQTKSKSYQDSTVLPQS
IYRRKLQHFQEEKNKEIAILRNTIRDLEQRLSVGKDSHLKRRRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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