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Report for CCDS46673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46673.1 Public Homo sapiens 22 SLC2A11 24 110 108 CCDS HistoryNCBI Gene:66035Re-query CCDS DB by CCDS ID:46673.1Re-query CCDS DB by GeneID:66035See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46673.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345044.10 ENSP00000342542.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345044.10Link to Ensembl Protein Viewer:ENSP00000342542.5Re-query CCDS DB by Nucleotide ID:ENST00000345044Re-query CCDS DB by Protein ID:ENSP00000342542
Original member Current member NCBI NM_001024938.4 NP_001020109.1 Accepted alive Link to Nucleotide Sequence:NM_001024938.4Link to Protein Sequence:NP_001020109.1Re-query CCDS DB by Nucleotide ID:NM_001024938Re-query CCDS DB by Protein ID:NP_001020109Link to BLAST:NP_001020109.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020109.1 496 Q9BYW1-1 496 100% 0 0

Chromosomal Locations for CCDS 46673.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 23856971 23856991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23862104 23862202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23868481 23868641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23875117 23875241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23877042 23877171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23877721 23877869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23882459 23882646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23882759 23882869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23883772 23883873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23883949 23884024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23884302 23884429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23884649 23884849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGAGAGCGCTCCGAAGACTGATTCAGGGCAGGATCCTGCTCCTGACCATCTGCGCTGCCGGCATTGGTG
GGACTTTTCAGTTTGGCTATAACCTCTCTATCATCAATGCCCCGACCTTGCACATTCAGGAATTCACCAA
TGAGACATGGCAGGCGCGTACTGGAGAGCCACTGCCCGATCACCTAGTCCTGCTTATGTGGTCCCTCATC
GTGTCTCTGTATCCCCTGGGAGGCCTCTTTGGAGCACTGCTTGCAGGTCCCTTGGCCATCACGCTGGGAA
GGAAGAAGTCCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAATCCTGTTTGGATTCAGCCGCAA
AGCAGGCTCCTTTGAGATGATCATGCTGGGAAGACTGCTCGTGGGAGTCAATGCAGGTGTGAGCATGAAC
ATCCAGCCCATGTACCTGGGGGAGAGCGCCCCTAAGGAGCTCCGAGGAGCTGTGGCCATGAGCTCAGCCA
TCTTTACGGCTCTGGGGATCGTGATGGGACAGGTGGTCGGACTCAGGGAGCTCCTAGGTGGCCCTCAGGC
CTGGCCCCTGCTGCTGGCCAGCTGCCTGGTGCCCGGGGCGCTCCAGCTCGCCTCCCTGCCTCTGCTCCCT
GAAAGCCCGCGCTACCTCCTCATTGACTGTGGAGACACCGAGGCCTGCCTGGCAGCACTACGGCGGCTCC
GGGGCTCCGGGGACTTGGCAGGGGAGCTGGAGGAGCTGGAGGAGGAGCGCGCTGCCTGCCAGGGCTGCCG
TGCCCGGCGCCCATGGGAGCTGTTCCAGCATCGGGCCCTGAGGAGACAGGTGACAAGCCTCGTGGTTCTG
GGCAGTGCCATGGAGCTCTGCGGGAATGACTCGGTGTACGCCTACGCCTCCTCCGTGTTCCGGAAGGCAG
GAGTGCCGGAAGCGAAGATCCAGTACGCGATCATCGGGACTGGGAGCTGCGAGCTGCTCACGGCGGTTGT
TAGTTGTGTGGTAATCGAGAGGGTGGGTCGGCGCGTGCTGCTCATCGGTGGGTACAGCCTGATGACCTGC
TGGGGGAGCATCTTCACTGTGGCCCTGTGCCTGCAGAGCTCCTTCCCCTGGACACTCTACCTGGCCATGG
CCTGCATCTTTGCCTTCATCCTCAGCTTTGGCATTGGCCCTGCCGGAGTGACGGGGATCCTGGCCACAGA
GCTGTTTGACCAGATGGCCAGGCCTGCTGCCTGCATGGTCTGCGGGGCGCTCATGTGGATCATGCTCATC
CTGGTCGGCCTGGGATTTCCCTTTATCATGGAGGCCTTGTCCCACTTCCTCTATGTCCCTTTCCTTGGTG
TCTGTGTCTGTGGGGCCATCTACACTGGCCTGTTCCTTCCTGAGACCAAAGGCAAGACCTTCCAAGAGAT
CTCCAAGGAATTACACAGACTCAACTTCCCCAGGCGGGCCCAGGGCCCCACGTGGAGGAGCCTGGAGGTT
ATCCAGTCAACAGAACTCTAG

Translation (496 aa):
MRALRRLIQGRILLLTICAAGIGGTFQFGYNLSIINAPTLHIQEFTNETWQARTGEPLPDHLVLLMWSLI
VSLYPLGGLFGALLAGPLAITLGRKKSLLVNNIFVVSAAILFGFSRKAGSFEMIMLGRLLVGVNAGVSMN
IQPMYLGESAPKELRGAVAMSSAIFTALGIVMGQVVGLRELLGGPQAWPLLLASCLVPGALQLASLPLLP
ESPRYLLIDCGDTEACLAALRRLRGSGDLAGELEELEEERAACQGCRARRPWELFQHRALRRQVTSLVVL
GSAMELCGNDSVYAYASSVFRKAGVPEAKIQYAIIGTGSCELLTAVVSCVVIERVGRRVLLIGGYSLMTC
WGSIFTVALCLQSSFPWTLYLAMACIFAFILSFGIGPAGVTGILATELFDQMARPAACMVCGALMWIMLI
LVGLGFPFIMEALSHFLYVPFLGVCVCGAIYTGLFLPETKGKTFQEISKELHRLNFPRRAQGPTWRSLEV
IQSTEL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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