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Report for CCDS46609.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46609.1 Public Homo sapiens 20 CTSA 22 109 92 CCDS HistoryNCBI Gene:5476Re-query CCDS DB by CCDS ID:46609.1Re-query CCDS DB by GeneID:5476See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46609.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000191018.9 ENSP00000191018.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000191018.9Link to Ensembl Protein Viewer:ENSP00000191018.5Re-query CCDS DB by Nucleotide ID:ENST00000191018Re-query CCDS DB by Protein ID:ENSP00000191018
Original member Current member EBI ENST00000372459.6 ENSP00000361537.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372459.6Link to Ensembl Protein Viewer:ENSP00000361537.2Re-query CCDS DB by Nucleotide ID:ENST00000372459Re-query CCDS DB by Protein ID:ENSP00000361537
Original member Current member EBI ENST00000646241.1 ENSP00000493613.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646241.1Link to Ensembl Protein Viewer:ENSP00000493613.1Re-query CCDS DB by Nucleotide ID:ENST00000646241Re-query CCDS DB by Protein ID:ENSP00000493613
Original member NCBI NM_001127695.2 NP_001121167.1 Updated not alive Link to Nucleotide Sequence:NM_001127695.2Link to Protein Sequence:NP_001121167.1Re-query CCDS DB by Nucleotide ID:NM_001127695Re-query CCDS DB by Protein ID:NP_001121167
Current member NCBI NM_001127695.3 NP_001121167.1 Accepted alive Link to Nucleotide Sequence:NM_001127695.3Link to Protein Sequence:NP_001121167.1Re-query CCDS DB by Nucleotide ID:NM_001127695Re-query CCDS DB by Protein ID:NP_001121167Link to BLAST:NP_001121167.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121167.1 480 P10619-1 480 100% 0 0

Chromosomal Locations for CCDS 46609.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45891569 45891762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45891916 45892027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45892273 45892323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45892398 45892484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45892725 45892880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45893220 45893311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45893988 45894072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45894650 45894741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45894823 45894901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45894994 45895133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45896965 45897040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45897717 45897806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45898005 45898109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45898367 45898450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGATCCGAGCCGCGCCGCCGCCGCTGTTCCTGCTGCTGCTGCTGCTGCTGCTGCTAGTGTCCTGGGCGT
CC
CGAGGCGAGGCAGCCCCCGACCAGGACGAGATCCAGCGCCTCCCCGGGCTGGCCAAGCAGCCGTCTTT
C
CGCCAGTACTCCGGCTACCTCAAAGGCTCCGGCTCCAAGCACCTCCACTACTGGTTTGTGGAGTCCCAG
AAG
GATCCCGAGAACAGCCCTGTGGTGCTTTGGCTCAATGGGGGTCCCGGCTGCAGCTCACTAGATGGGC
TC
CTCACAGAGCATGGCCCCTTCCTGGTCCAGCCAGATGGTGTCACCCTGGAGTACAACCCCTATTCTTG
G
AATCTGATTGCCAATGTGTTATACCTGGAGTCCCCAGCTGGGGTGGGCTTCTCCTACTCCGATGACAAG
TTT
TATGCAACTAATGACACTGAGGTCGCCCAGAGCAATTTTGAGGCCCTTCAAGATTTCTTCCGCCTCT
TT
CCGGAGTACAAGAACAACAAACTTTTCCTGACCGGGGAGAGCTATGCTGGCATCTACATCCCCACCCT
G
GCCGTGCTGGTCATGCAGGATCCCAGCATGAACCTTCAGGGGCTGGCTGTGGGCAATGGACTCTCCTCC
TAT
GAGCAGAATGACAACTCCCTGGTCTACTTTGCCTACTACCATGGCCTTCTGGGGAACAGGCTTTGGT
CT
TCTCTCCAGACCCACTGCTGCTCTCAAAACAAGTGTAACTTCTATGACAACAAAGACCTGGAATGCGT
G
ACCAATCTTCAGGAAGTGGCCCGCATCGTGGGCAACTCTGGCCTCAACATCTACAATCTCTATGCCCCG
TGT
GCTGGAGGGGTGCCCAGCCATTTTAGGTATGAGAAGGACACTGTTGTGGTCCAGGATTTGGGCAACA
TC
TTCACTCGCCTGCCACTCAAGCGGATGTGGCATCAGGCACTGCTGCGCTCAGGGGATAAAGTGCGCAT
G
GACCCCCCCTGCACCAACACAACAGCTGCTTCCACCTACCTCAACAACCCGTACGTGCGGAAGGCCCTC
AAC
ATCCCGGAGCAGCTGCCACAATGGGACATGTGCAACTTTCTGGTAAACTTACAGTACCGCCGTCTCT
AC
CGAAGCATGAACTCCCAGTATCTGAAGCTGCTTAGCTCACAGAAATACCAGATCCTATTATATAATGG
A
GATGTAGACATGGCCTGCAATTTCATGGGGGATGAGTGGTTTGTGGATTCCCTCAACCAGAAGATGGAG
GTG
CAGCGCCGGCCCTGGTTAGTGAAGTACGGGGACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGT
TC
TCCCACATCGCCTTTCTCACGATCAAGGGCGCCGGCCACATGGTTCCCACCGACAAGCCCCTCGCTGC
C
TTCACCATGTTCTCCCGCTTCCTGAACAAGCAGCCATACTGA


Translation (480 aa):
MIRAAPPPLFLLLLLLLLLVSWASRGEAAPDQDEIQRLPGLAKQPSFRQYSGYLKGSGSKHLHYWFVESQ
K
DPENSPVVLWLNGGPGCSSLDGLLTEHGPFL
VQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDK
F
YATNDTE
VAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSS
Y
EQNDNSLVYFAYYHGLLGN
RLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVARIVGNSGLNIYNLYAP
C
AGGVPSHF
RYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKAL
N
IPEQLPQWDMC
NFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKME
V
QRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIK
GAGHMVPTDKPLAAFTMFSRFLNKQPY



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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