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Report for CCDS4596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4596.1 Public Homo sapiens 6 H3C6 24 110 108 CCDS HistoryNCBI Gene:8353Re-query CCDS DB by CCDS ID:4596.1Re-query CCDS DB by GeneID:8353See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4596.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000614911.3 ENSP00000482271.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000614911.3Link to Ensembl Protein Viewer:ENSP00000482271.1Re-query CCDS DB by Nucleotide ID:ENST00000614911Re-query CCDS DB by Protein ID:ENSP00000482271
Original member Current member EBI ENST00000634733.1 ENSP00000489282.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000634733.1Link to Ensembl Protein Viewer:ENSP00000489282.1Re-query CCDS DB by Nucleotide ID:ENST00000634733Re-query CCDS DB by Protein ID:ENSP00000489282
Original member Current member NCBI NM_001381999.1 NP_001368928.1 Accepted alive Link to Nucleotide Sequence:NM_001381999.1Link to Protein Sequence:NP_001368928.1Re-query CCDS DB by Nucleotide ID:NM_001381999Re-query CCDS DB by Protein ID:NP_001368928Link to BLAST:NP_001368928.1
Original member Current member NCBI NM_003532.3 NP_003523.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003532.3Link to Protein Sequence:NP_003523.1Re-query CCDS DB by Nucleotide ID:NM_003532Re-query CCDS DB by Protein ID:NP_003523Link to BLAST:NP_003523.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001368928.1 136 P68431 136 100% 0 0
NP_003523.1 136 P68431 136 100% 0 0

Chromosomal Locations for CCDS 4596.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 26225155 26225565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGGCGCGTACTAAGCAGACGGCTCGTAAATCCACAGGCGGTAAAGCACCGCGCAAACAGCTGGCCACTA
AGGCAGCTCGCAAGAGCGCTCCGGCCACGGGCGGCGTGAAGAAGCCCCATCGCTACCGCCCTGGCACCGT
GGCTCTGCGCGAGATCCGTCGCTACCAGAAGTCTACCGAGCTTCTAATCCGGAAGCTGCCGTTTCAGCGC
CTGGTGCGAGAAATAGCTCAGGACTTCAAGACCGACCTGCGCTTCCAGAGTTCCGCGGTGATGGCGCTGC
AGGAGGCCTGCGAGGCCTACTTGGTGGGGCTTTTCGAGGACACCAACCTGTGCGCTATTCATGCCAAACG
CGTGACCATCATGCCTAAAGACATCCAGCTTGCCCGCCGCATTCGTGGGGAGAGGGCGTGA

Translation (136 aa):
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR
LVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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