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Report for CCDS45080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45080.1 Public Homo sapiens 14 RPGRIP1 24 110 108 CCDS HistoryNCBI Gene:57096Re-query CCDS DB by CCDS ID:45080.1Re-query CCDS DB by GeneID:57096See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45080.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400017.7 ENSP00000382895.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400017.7Link to Ensembl Protein Viewer:ENSP00000382895.2Re-query CCDS DB by Nucleotide ID:ENST00000400017Re-query CCDS DB by Protein ID:ENSP00000382895
Original member Current member NCBI NM_020366.4 NP_065099.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020366.4Link to Protein Sequence:NP_065099.3Re-query CCDS DB by Nucleotide ID:NM_020366Re-query CCDS DB by Protein ID:NP_065099Link to BLAST:NP_065099.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065099.3 1286 Q96KN7-1 1286 100% 0 0

Chromosomal Locations for CCDS 45080.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 21287977 21288061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21294677 21294809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21300966 21301237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21302488 21302584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21303331 21303543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21307731 21307836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21310584 21310607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21311824 21311970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21312433 21312506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21317696 21317850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21320017 21320177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21321259 21321402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21321854 21322004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21324618 21325070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21325232 21325383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21325831 21326173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21327623 21327807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21328424 21328627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21330249 21330387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21334605 21334705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21343036 21343228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21345113 21345197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21348172 21348302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21351104 21351216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3861 nt):
ATGTCACATCTGGTGGACCCTACATCAGGAGACTTGCCAGTTAGAGACATAGATGCTATACCTCTGGTGC
TACCAGCCTCAAAAGGTAAGAATATGAAAACTCAACCACCCTTGAGCAGGATGAACCGGGAGGAATTGGA
GGACAGTTTCTTTCGACTTCGCGAAGATCACATGTTGGTGAAGGAGCTTTCTTGGAAGCAACAGGATGAG
ATCAAAAGGCTGAGGACCACCTTGCTGCGGTTGACCGCTGCTGGCCGGGACCTGCGGGTCGCGGAGGAGG
CGGCGCCGCTCTCGGAGACCGCAAGGCGCGGGCAGAAGGCGGGATGGCGGCAGCGCCTCTCCATGCACCA
GCGCCCCCAGATGCACCGACTGCAAGGGCATTTCCACTGCGTCGGCCCTGCCAGCCCCCGCCGCGCCCAG
CCTCGCGTCCAAGTGGGACACAGACAGCTCCACACAGCCGGTGCACCGGTGCCGGAGAAACCCAAGAGGG
GGCCAAGGGACAGGCTGAGCTACACAGCCCCTCCATCGTTTAAGGAGCATGCGACAAATGAAAACAGAGG
TGAAGTAGCCAGTAAACCCAGTGAACTTGTTTCTGGTTCTAACAGCATAATTTCTTTCAGCAGTGTCATA
AGTATGGCTAAACCCATTGGTCTATGCATGCCTAACAGTGCCCACATCATGGCCAGCAATACCATGCAAG
TGGAAGAGCCACCCAAGTCTCCTGAGAAAATGTGGCCTAAAGATGAAAATTTTGAACAGAGAAGCTCATT
GGAGTGTGCTCAGAAGGCTGCAGAGCTTCGAGCTTCCATTAAAGAGAAGGTAGAGCTGATTCGACTTAAG
AAGCTCTTACATGAAAGAAATGCTTCATTGGTTATGACAAAAGCACAATTAACAGAAGTTCAAGAGGCAT
ACGAAACCTTGCTCCAGAAGAATCAGGGAATCCTGAGTGCAGCCCATGAGGCCCTCCTCAAGCAAGTGAA
TGAGCTCAGGGCAGAGCTGAAGGAAGAAAGCAAGAAGGCTGTGAGCTTGAAGAGCCAACTGGAAGATGTG
TCTATCTTGCAGATGACTCTGAAGGAGTTTCAGGAGAGAGTTGAAGATTTGGAAAAAGAACGAAAATTGC
TGAATGACAATTATGACAAACTCTTAGAAAGCATGCTGGACAGCAGTGACAGCTCCAGTCAGCCCCACTG
GAGCAACGAGCTCATAGCGGAACAGCTACAGCAGCAAGTCTCTCAGCTGCAGGATCAGCTGGATGCTGAG
CTGGAGGACAAGAGAAAAGTTTTACTTGAGCTGTCCAGGGAGAAAGCCCAAAATGAGGATCTGAAGCTTG
AAGTCACCAACATACTTCAGAAGCATAAACAGGAAGTAGAGCTCCTCCAAAATGCAGCCACAATTTCCCA
ACCTCCTGACAGGCAATCTGAACCAGCCACTCACCCAGCTGTATTGCAAGAGAACACTCAGATCGAGCCA
AGTGAACCCAAAAACCAAGAAGAAAAGAAACTGTCCCAGGTGCTAAATGAGTTGCAAGTATCACACGCAG
AGACCACATTGGAACTAGAAAAGACCAGGGACATGCTTATTCTGCAGCGCAAAATCAACGTGTGTTATCA
GGAGGAACTGGAGGCAATGATGACAAAAGCTGACAATGATAATAGAGATCACAAAGAAAAGCTGGAGAGG
TTGACTCGACTACTAGACCTCAAGAATAACCGTATCAAGCAGCTGGAAGGTATTTTAAGAAGCCATGACC
TTCCAACATCTGAACAGCTCAAAGATGTTGCTTATGGCACCCGACCGTTGTCGTTATGTTTGGAAACACT
GCCAGCCCATGGAGATGAGGATAAAGTGGATATTTCTCTGCTGCATCAGGGTGAGAATCTTTTTGAACTG
CACATCCACCAGGCCTTCCTGACATCTGCCGCCCTAGCTCAGGCTGGAGATACCCAACCTACCACTTTCT
GCACCTATTCCTTCTATGACTTTGAAACCCACTGTACCCCATTATCTGTGGGGCCACAGCCCCTCTATGA
CTTCACCTCCCAGTATGTGATGGAGACAGATTCGCTTTTCTTACACTACCTTCAAGAGGCTTCAGCCCGG
CTTGACATACACCAGGCCATGGCCAGTGAACACAGCACTCTTGCTGCAGGATGGATTTGCTTTGACAGGG
TGCTAGAGACTGTGGAGAAAGTCCATGGCTTGGCCACACTGATTGGAGCTGGTGGAGAAGAGTTCGGGGT
TCTAGAGTACTGGATGAGGCTGCGTTTCCCCATAAAACCCAGCCTACAGGCGTGCAATAAACGAAAGAAA
GCCCAGGTCTACCTGTCAACCGATGTGCTTGGAGGCCGGAAGGCCCAGGAAGAGGAGTTCAGATCGGAGT
CTTGGGAACCTCAGAACGAGCTGTGGATTGAAATCACCAAGTGCTGTGGCCTCCGGAGTCGATGGCTGGG
AACTCAACCCAGTCCATATGCTGTGTACCGCTTCTTCACCTTTTCTGACCATGACACTGCCATCATTCCA
GCCAGTAACAACCCCTACTTTAGAGACCAGGCTCGATTCCCAGTGCTTGTGACCTCTGACCTGGACCATT
ATCTGAGACGGGAGGCCTTGTCTATACATGTTTTTGATGATGAAGACTTAGAGCCTGGCTCGTATCTTGG
CCGAGCCCGAGTGCCTTTACTGCCTCTTGCAAAAAATGAATCTATCAAAGGTGATTTTAACCTCACTGAC
CCTGCAGAGAAACCCAACGGATCTATTCAAGTGCAACTGGATTGGAAGTTTCCCTACATACCCCCTGAGA
GCTTCCTGAAACCAGAAGCTCAGACTAAGGGGAAGGATACCAAGGACAGTTCAAAGATCTCATCTGAAGA
GGAAAAGGCTTCATTTCCTTCCCAGGATCAGATGGCATCTCCTGAGGTTCCCATTGAAGCTGGCCAGTAT
CGATCTAAGAGAAAACCTCCTCATGGGGGAGAAAGAAAGGAGAAGGAGCACCAGGTTGTGAGCTACTCAA
GAAGAAAACATGGCAAAAGAATAGGTGTTCAAGGAAAGAATAGAATGGAGTATCTTAGCCTTAACATCTT
AAATGGAAATACACCAGAGCAGGTGAATTACACTGAGTGGAAGTTCTCAGAGACTAACAGCTTCATAGGT
GATGGCTTTAAAAATCAGCACGAGGAAGAGGAAATGACATTATCCCATTCAGCACTGAAACAGAAGGAAC
CTCTACATCCTGTAAATGACAAAGAATCCTCTGAACAAGGTTCTGAAGTCAGTGAAGCACAAACTACCGA
CAGTGATGATGTCATAGTGCCACCCATGTCTCAGAAATATCCTAAGGCAGATTCAGAGAAGATGTGCATT
GAAATTGTCTCCCTGGCCTTCTACCCAGAGGCAGAAGTGATGTCTGATGAGAACATAAAACAGGTGTATG
TGGAGTACAAATTCTACGACCTACCCTTGTCGGAGACAGAGACTCCAGTGTCCCTAAGGAAGCCTAGGGC
AGGAGAAGAAATCCACTTTCACTTTAGCAAGGTAATAGACCTGGACCCACAGGAGCAGCAAGGCCGAAGG
CGGTTTCTGTTCGACATGCTGAATGGACAAGATCCTGATCAAGGACATTTAAAGTTTACAGTGGTAAGTG
ATCCTCTGGATGAAGAAAAGAAAGAATGTGAAGAAGTGGGATATGCATATCTTCAACTGTGGCAGATCCT
GGAGTCAGGAAGAGATATTCTAGAGCAAGAGCTAGACATTGTTAGCCCTGAAGATCTGGCTACCCCAATA
GGAAGGCTGAAGGTTTCCCTTCAAGCAGCTGCTGTCCTCCATGCTATTTACAAGGAGATGACTGAAGATT
TGTTTTCATGA

Translation (1286 aa):
MSHLVDPTSGDLPVRDIDAIPLVLPASKGKNMKTQPPLSRMNREELEDSFFRLREDHMLVKELSWKQQDE
IKRLRTTLLRLTAAGRDLRVAEEAAPLSETARRGQKAGWRQRLSMHQRPQMHRLQGHFHCVGPASPRRAQ
PRVQVGHRQLHTAGAPVPEKPKRGPRDRLSYTAPPSFKEHATNENRGEVASKPSELVSGSNSIISFSSVI
SMAKPIGLCMPNSAHIMASNTMQVEEPPKSPEKMWPKDENFEQRSSLECAQKAAELRASIKEKVELIRLK
KLLHERNASLVMTKAQLTEVQEAYETLLQKNQGILSAAHEALLKQVNELRAELKEESKKAVSLKSQLEDV
SILQMTLKEFQERVEDLEKERKLLNDNYDKLLESMLDSSDSSSQPHWSNELIAEQLQQQVSQLQDQLDAE
LEDKRKVLLELSREKAQNEDLKLEVTNILQKHKQEVELLQNAATISQPPDRQSEPATHPAVLQENTQIEP
SEPKNQEEKKLSQVLNELQVSHAETTLELEKTRDMLILQRKINVCYQEELEAMMTKADNDNRDHKEKLER
LTRLLDLKNNRIKQLEGILRSHDLPTSEQLKDVAYGTRPLSLCLETLPAHGDEDKVDISLLHQGENLFEL
HIHQAFLTSAALAQAGDTQPTTFCTYSFYDFETHCTPLSVGPQPLYDFTSQYVMETDSLFLHYLQEASAR
LDIHQAMASEHSTLAAGWICFDRVLETVEKVHGLATLIGAGGEEFGVLEYWMRLRFPIKPSLQACNKRKK
AQVYLSTDVLGGRKAQEEEFRSESWEPQNELWIEITKCCGLRSRWLGTQPSPYAVYRFFTFSDHDTAIIP
ASNNPYFRDQARFPVLVTSDLDHYLRREALSIHVFDDEDLEPGSYLGRARVPLLPLAKNESIKGDFNLTD
PAEKPNGSIQVQLDWKFPYIPPESFLKPEAQTKGKDTKDSSKISSEEEKASFPSQDQMASPEVPIEAGQY
RSKRKPPHGGERKEKEHQVVSYSRRKHGKRIGVQGKNRMEYLSLNILNGNTPEQVNYTEWKFSETNSFIG
DGFKNQHEEEEMTLSHSALKQKEPLHPVNDKESSEQGSEVSEAQTTDSDDVIVPPMSQKYPKADSEKMCI
EIVSLAFYPEAEVMSDENIKQVYVEYKFYDLPLSETETPVSLRKPRAGEEIHFHFSKVIDLDPQEQQGRR
RFLFDMLNGQDPDQGHLKFTVVSDPLDEEKKECEEVGYAYLQLWQILESGRDILEQELDIVSPEDLATPI
GRLKVSLQAAAVLHAIYKEMTEDLFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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