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Report for CCDS45006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45006.1 Public Homo sapiens 12 RILPL1 24 110 108 CCDS HistoryNCBI Gene:353116Re-query CCDS DB by CCDS ID:45006.1Re-query CCDS DB by GeneID:353116See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45006.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376874.9 ENSP00000366070.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376874.9Link to Ensembl Protein Viewer:ENSP00000366070.4Re-query CCDS DB by Nucleotide ID:ENST00000376874Re-query CCDS DB by Protein ID:ENSP00000366070
Original member Current member NCBI NM_178314.5 NP_847884.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178314.5Link to Protein Sequence:NP_847884.2Re-query CCDS DB by Nucleotide ID:NM_178314Re-query CCDS DB by Protein ID:NP_847884Link to BLAST:NP_847884.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_847884.2 403 Q5EBL4-1 403 100% 0 0

Chromosomal Locations for CCDS 45006.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 123472538 123472682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123484180 123484272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123485633 123485805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123498544 123498765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123499418 123499536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123523495 123523645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123533174 123533482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGGAGGAGGAGCGGGGGTCGGCGCTGGCGGCCGAGTCGGCGCTGGAGAAGAACGTGGCCGAGCTGACCG
TCATGGACGTGTACGACATCGCGTCGCTTGTGGGCCACGAGTTCGAGCGGGTCATTGACCAGCACGGCTG
CGAGGCCATCGCGCGCCTCATGCCCAAGGTCGTGCGCGTCCTGGAGATCCTGGAGGTGCTGGTCAGCCGC
CACCACGTCGCGCCCGAGCTGGACGAGCTGCGCCTGGAGCTGGACCGCCTGCGCCTGGAGAGGATGGACC
GCATCGAGAAGGAGCGCAAGCACCAGAAGGAGCTGGAGCTGGTGGAGGATGTGTGGCGAGGGGAGGCGCA
GGACCTCCTCTCCCAGATCGCCCAGCTGCAGGAGGAGAACAAGCAGCTCATGACCAACCTCTCCCACAAG
GATGTCAATTTCTCAGAGGAGGAGTTCCAGAAGCATGAAGGCATGTCAGAGCGGGAGCGACAGGTGATGA
AGAAGCTGAAGGAGGTGGTGGACAAACAACGCGACGAGATCCGCGCCAAGGACAGGGAGCTGGGCCTGAA
AAATGAGGACGTTGAGGCTTTACAGCAGCAGCAGACACGGCTGATGAAGATCAACCATGACCTTCGGCAC
CGGGTCACGGTGGTGGAGGCCCAGGGGAAAGCCCTGATCGAACAGAAGGTGGAGCTGGAGGCAGACCTGC
AGACCAAGGAGCAGGAGATGGGCAGCCTGCGAGCAGAGCTGGGGAAGTTGCGAGAGAGGCTGCAGGGGGA
GCACAGCCAGAATGGGGAGGAGGAGCCTGAGACGGAGCCGGTGGGAGAGGAGAGCATCTCCGACGCAGAG
AAGGTGGCCATGGATCTCAAGGACCCCAACCGCCCCCGGTTCACCCTGCAGGAGCTGCGGGACGTGCTGC
ACGAGAGGAACGAGCTCAAGTCCAAGGTGTTCTTGCTGCAGGAGGAGCTGGCTTACTATAAGAGTGAAGA
AATGGAAGAGGAAAACCGAATACCCCAACCCCCACCCATCGCCCACCCGAGGACGTCCCCCCAGCCGGAG
TCGGGCATCAAGCGACTGTTTAGCTTCTTCTCCCGAGATAAGAAGCGCCTGGCCAACACACAGAGAAACG
TGCACATCCAGGAGTCCTTTGGACAGTGGGCAAACACCCACCGCGATGACGGTTACACAGAGCAAGGACA
GGAAGCCCTGCAGCATCTGTGA

Translation (403 aa):
MEEERGSALAAESALEKNVAELTVMDVYDIASLVGHEFERVIDQHGCEAIARLMPKVVRVLEILEVLVSR
HHVAPELDELRLELDRLRLERMDRIEKERKHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLSHK
DVNFSEEEFQKHEGMSERERQVMKKLKEVVDKQRDEIRAKDRELGLKNEDVEALQQQQTRLMKINHDLRH
RVTVVEAQGKALIEQKVELEADLQTKEQEMGSLRAELGKLRERLQGEHSQNGEEEPETEPVGEESISDAE
KVAMDLKDPNRPRFTLQELRDVLHERNELKSKVFLLQEELAYYKSEEMEEENRIPQPPPIAHPRTSPQPE
SGIKRLFSFFSRDKKRLANTQRNVHIQESFGQWANTHRDDGYTEQGQEALQHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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