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Report for CCDS44668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44668.1 Public Homo sapiens 11 LRTOMT 24 110 108 CCDS HistoryNCBI Gene:220074Re-query CCDS DB by CCDS ID:44668.1Re-query CCDS DB by GeneID:220074See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44668.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307198.11 ENSP00000305742.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000307198.11Link to Ensembl Protein Viewer:ENSP00000305742.7Re-query CCDS DB by Nucleotide ID:ENST00000307198Re-query CCDS DB by Protein ID:ENSP00000305742
Original member Current member NCBI NM_001145308.5 NP_001138780.1 Accepted alive Link to Nucleotide Sequence:NM_001145308.5Link to Protein Sequence:NP_001138780.1Re-query CCDS DB by Nucleotide ID:NM_001145308Re-query CCDS DB by Protein ID:NP_001138780Link to BLAST:NP_001138780.1

Chromosomal Locations for CCDS 44668.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72095063 72095096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72104964 72105012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72105936 72106210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72107923 72108119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72108605 72108925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGGAACCCCATGGAGGAAGAGAAAGGGTATAGCAGGCCCTGGACTCCCCGACCTGTCCTGTGCTCTGG
TCCTCCAGCCCAGGGCCCAGGTAGGGACCATGTCCCCTGCCATTGCATTGGCCTTCCTGCCACTGGTGGT
AACATTGCTGGTGCGGTACCGGCACTACTTCCGATTGCTGGTGCGCACGGTCTTGCTGCGAAGCCTCCGA
GACTGCCTGTCAGGGCTGCGGATCGAGGAGCGGGCCTTCAGCTACGTGCTCACCCATGCCCTGCCCGGTG
ACCCTGGTCACATCCTCACCACCCTGGACCACTGGAGCAGCCGCTGCGAGTACTTGAGCCACATGGGGCC
TGTCAAAGGTCAGATCCTGATGCGGCTGGTGGAGGAGAAGGCCCCTGCTTGTGTGCTGGAATTGGGAACC
TACTGTGGATACTCTACCCTGCTTATTGCCCGAGCCCTGCCCCCTGGGGGTCGCCTTCTTACTGTGGAGC
GGGACCCACGCACGGCAGCAGTGGCTGAAAAACTCATCCGCCTGGCCGGCTTTGATGAGCACATGGTGGA
GCTCATCGTGGGCAGCTCAGAGGACGTGATCCCGTGCCTACGCACCCAGTATCAGCTGAGTCGGGCAGAC
CTGGTGCTCCTGGCACACCGGCCACGATGTTACCTGAGGGACCTGCAGCTGCTGGAGGCCCATGCCCTAC
TGCCAGCAGGTGCCACCGTGCTGGCTGACCATGTGCTCTTCCCTGGTGCACCCCGCTTCTTGCAGTATGC
TAAGAGCTGTGGCCGCTACCGCTGCCGCCTCCACCACACTGGCCTTCCAGACTTCCCTGCCATCAAGGAT
GGAATAGCTCAGCTCACCTATGCTGGACCAGGCTGA

Translation (291 aa):
MGTPWRKRKGIAGPGLPDLSCALVLQPRAQVGTMSPAIALAFLPLVVTLLVRYRHYFRLLVRTVLLRSLR
DCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELGT
YCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAGFDEHMVELIVGSSEDVIPCLRTQYQLSRAD
LVLLAHRPRCYLRDLQLLEAHALLPAGATVLADHVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKD
GIAQLTYAGPG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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