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Report for CCDS440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
440.1 Public Homo sapiens 1 NT5C1A 24 110 108 CCDS HistoryNCBI Gene:84618Re-query CCDS DB by CCDS ID:440.1Re-query CCDS DB by GeneID:84618See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 440.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000235628.2 ENSP00000235628.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000235628.2Link to Ensembl Protein Viewer:ENSP00000235628.1Re-query CCDS DB by Nucleotide ID:ENST00000235628Re-query CCDS DB by Protein ID:ENSP00000235628
Original member Current member NCBI NM_032526.3 NP_115915.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032526.3Link to Protein Sequence:NP_115915.1Re-query CCDS DB by Nucleotide ID:NM_032526Re-query CCDS DB by Protein ID:NP_115915Link to BLAST:NP_115915.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115915.1 368 Q9BXI3 368 100% 0 0

Chromosomal Locations for CCDS 440.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 39659121 39659486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39661079 39661263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39663312 39663434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39665521 39665650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39666069 39666236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39671904 39672038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGAACCTGGGCAGCCCCGGGAGCCCCAGGAGCCCCGCGAGCCCGGGCCAGGAGCGGAGACCGCTGCGG
CCCCGGTCTGGGAGGAAGCCAAGATTTTCTACGACAACCTCGCGCCCAAGAAGAAACCCAAATCGCCCAA
GCCTCAGAATGCAGTCACCATCGCTGTGTCCTCCCGAGCCTTGTTTCGCATGGACGAGGAGCAGCAGATC
TACACGGAGCAGGGCGTGGAGGAGTACGTGCGCTACCAGCTGGAACATGAGAACGAACCCTTCAGTCCCG
GGCCAGCCTTCCCTTTTGTGAAGGCTCTGGAGGCCGTGAACAGGCGGCTGCGGGAGCTGTACCCTGATAG
TGAGGACGTCTTCGACATCGTCCTCATGACTAACAACCATGCTCAAGTGGGTGTCCGCCTCATCAACAGT
ATCAACCACTATGACCTGTTCATCGAGAGGTTCTGCATGACAGGTGGGAACAGCCCGATCTGCTACCTCA
AGGCCTATCACACCAACCTCTACTTGTCAGCCGATGCGGAAAAAGTGCGAGAAGCCATTGATGAGGGGAT
CGCAGCTGCCACCATCTTCAGCCCCAGCAGGGATGTGGTTGTGTCCCAGAGTCAGCTGCGCGTGGCCTTC
GATGGGGACGCCGTGCTCTTCTCGGACGAGTCGGAGCGCATCGTCAAGGCCCACGGGCTGGACCGATTCT
TCGAGCATGAGAAGGCCCACGAGAACAAACCTCTGGCTCAGGGCCCCTTAAAGGGCTTTCTGGAGGCACT
GGGTAGGTTGCAGAAGAAGTTCTACTCCAAAGGCCTGCGGCTGGAGTGCCCAATTCGTACCTACTTGGTG
ACAGCACGCAGTGCAGCCAGTTCCGGGGCCCGGGCTCTCAAGACCCTGCGCAGCTGGGGCCTGGAGACAG
ATGAAGCCTTGTTCCTTGCTGGAGCGCCCAAGGGCCCTCTCCTTGAGAAGATCCGCCCACACATCTTCTT
TGATGACCAGATGTTCCATGTGGCTGGGGCTCAGGAGATGGGCACTGTGGCCGCCCATGTGCCTTATGGT
GTGGCACAGACACCCCGGCGGACTGCACCTGCAAAGCAGGCCCCATCTGCACAGTAG

Translation (368 aa):
MEPGQPREPQEPREPGPGAETAAAPVWEEAKIFYDNLAPKKKPKSPKPQNAVTIAVSSRALFRMDEEQQI
YTEQGVEEYVRYQLEHENEPFSPGPAFPFVKALEAVNRRLRELYPDSEDVFDIVLMTNNHAQVGVRLINS
INHYDLFIERFCMTGGNSPICYLKAYHTNLYLSADAEKVREAIDEGIAAATIFSPSRDVVVSQSQLRVAF
DGDAVLFSDESERIVKAHGLDRFFEHEKAHENKPLAQGPLKGFLEALGRLQKKFYSKGLRLECPIRTYLV
TARSAASSGARALKTLRSWGLETDEALFLAGAPKGPLLEKIRPHIFFDDQMFHVAGAQEMGTVAAHVPYG
VAQTPRRTAPAKQAPSAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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