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Report for CCDS43766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43766.1 Public Homo sapiens 8 KLHL38 24 110 108 CCDS HistoryNCBI Gene:340359Re-query CCDS DB by CCDS ID:43766.1Re-query CCDS DB by GeneID:340359See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43766.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325995.7 ENSP00000321475.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000325995.7Link to Ensembl Protein Viewer:ENSP00000321475.7Re-query CCDS DB by Nucleotide ID:ENST00000325995Re-query CCDS DB by Protein ID:ENSP00000321475
Original member Current member EBI ENST00000684634.1 ENSP00000508228.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000684634.1Link to Ensembl Protein Viewer:ENSP00000508228.1Re-query CCDS DB by Nucleotide ID:ENST00000684634Re-query CCDS DB by Protein ID:ENSP00000508228
Original member Current member NCBI NM_001081675.3 NP_001075144.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001081675.3Link to Protein Sequence:NP_001075144.2Re-query CCDS DB by Nucleotide ID:NM_001081675Re-query CCDS DB by Protein ID:NP_001075144Link to BLAST:NP_001075144.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075144.2 581 Q2WGJ6 581 100% 0 0

Chromosomal Locations for CCDS 43766.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 123645739 123646028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123646909 123647014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123651577 123652926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGGACGAGGAGTCACTAGATGGGCTGCTCTTCAAAGACCACGACTTCTCTTCTGACTTGTTGAGGCAGC
TC
AACAGCTTAAGGCAAAGCAGGATCCTGACTGATGTGAGCATCTGTGCCGGTGCCCGGGAGATCCCCTG
C
CACCGCAACGTGCTGGCCTCCAGCAGCCCCTACTTCAGGGCTATGTTCTGCAGCAGCTTCCGGGAGAAG
AGT
GAAGCCAAAGTGCAGCTGAAAGGCATTGACCCCCCAACCCTGGACCAGATCGTCTCCTACGTGTATA
CG
GGGGAGGCACATATTGCCACTGACAATGTCCTCCCCGTGATGGAGGCCGCCTCCATGCTACAGTTCCC
C
AAGCTGTTTGAGGCCTGCTCCTCGTACTTGCAGAGCCAGTTGGCCCCCAGCAACTGCCTGGGTATGATC
AGA
CTCTCAGAAATCTTAAGCTGCGAGACCCTCAAGAAGAAAGCCAGGGAGGTGGCACTGACGTCCTTCC
CA
GAGGTGGCCGCATCGGCCGACCTGAAGGAGCTCTGTGCCTTGGAGTTGAGGGACTATCTCGGAGATGA
T
GGGCTCTGTGGGGAGGAGGAAAAGGTGTTTGAGGCCCTCATGGTTTGGATCAAGCATGACCTCCAGGCC
CGG
AAGCGATACATGCAGGAACTGTTCAAGCAGGTCAGGCTGCAGTACATCCACCCAGCCTTCTTTCACC
AC
TTCATCGCCAACGATGCCCTCCTGCAGTCCTCGCCTGCATGCCAGATCATCTTGGAGACCGCCAAGAG
A
CAGATGTTCTCTTTGTGTGGCACCACCGTCCCAGACTGCAAACTCCTGTTGCATGTCCCTCCAAGAAAC
TCT
TACCAAGATTTCCTCATCCTCTTGGGCGGAAGGAAGGACAGCCAGCAGACCACCAGGGACGTCCTAC
TG
TACAGCAAACAGACCGGCCAATGGCAGAGCCTTGCCAAACTCCCGACACGGCTGTACAAGGCCTCTGC
C
ATCACCTTGCACCGCAGCATCTATGTGCTGGGGGGCATGGCTGTCAGCTCAGGGAGGAGTCTGGTCAGT
CAC
AATGTCTACATCTTCTCCCTGAAACTCAATCAGTGGAGGCTGGGGGAGCCCATGCTGGTGGCCCGCT
AC
TCCCACAGAAGCACTGCCCATAAGAACTTCATCTTCTCCATCGGGGGGATTGGAGAAGGGCAGGAGCT
C
ATGGGCTCCATGGAAAGGTATGACAGCATCTGCAATGTCTGGGAGAGTATGGCCAGCATGCCCGTGGGG
GTG
CTCCACCCCGCAGTCGCTGTGAAAGACCAAAGACTCTATCTCTTTGGAGGAGAGGACATCATGCAGA
AC
CCTGTGCGCCTTATCCAGGTTTATCACATTTCCAGAAACTCGTGGTTCAAAATGGAGACAAGAATGAT
C
AAGAACGTGTGTGCCCCTGCAGTGGTGCTTGGGGAGCGGATTGTCATTGTGGGAGGTTACACAAGGAGG
ATT
CTTGCTTATGACCCTCAATCCAACAAATTTGTCAAATGTGCGGACATGAAAGACCGGAGGATGCACC
AT
GGGGCCACAGTGATGGGAAACAAACTCTACGTGACGGGCGGGCGGCGGCTGACCACGGACTGCAACAT
T
GAGGACTCCGCCTCCTTCGATTGCTACGACCCCGAGACGGACACCTGGACATCCCAGGGACAGCTGCCG
CAC
AAGCTCTTTGACCATGCCTGCCTCACTCTCCAGTGCATACCCCGCACGTCTGGCCTCCCATGA


Translation (581 aa):
MDEESLDGLLFKDHDFSSDLLRQLNSLRQSRILTDVSICAGAREIPCHRNVLASSSPYFRAMFCSSFREK
S
EAKVQLKGIDPPTLDQIVSYVYTGEAHIATDNVLPVMEAASMLQFPKLFEACSSYLQSQLAPSNCLGMI
R
LSEILSCETLKKKAREVALTSFPEVAASADLKELCALELRDYLGDDGLCGEEEKVFEALMVWIKHDLQA
R
KRYMQELFKQVRLQYIHPAFFHHFIANDALLQSSPACQIILETAKRQMFSLCGTTVPDCKLLLHVPPRN
S
YQDFLILLGGRKDSQQTTRDVLLYSKQTGQWQSLAKLPTRLYKASAITLHRSIYVLGGMAVSSGRSLVS
H
NVYIFSLKLNQWRLGEPMLVARYSHRSTAHKNFIFSIGGIGEGQELMGSMERYDSICNVWESMASMPVG
V
LHPAVAVKDQRLYLFGGEDIMQNPVRLIQ
VYHISRNSWFKMETRMIKNVCAPAVVLGERIVIVGGYTRR
I
LAYDPQSNKFVKCADMKDRRMHHGATVMGNKLYVTGGRRLTTDCNIEDSASFDCYDPETDTWTSQGQLP
H
KLFDHACLTLQCIPRTSGLP




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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