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Report for CCDS43252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43252.1 Public Homo sapiens 4 SNCA 22 109 92 CCDS HistoryNCBI Gene:6622Re-query CCDS DB by CCDS ID:43252.1Re-query CCDS DB by GeneID:6622See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43252.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000345009.8 ENSP00000343683.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345009.8Link to Ensembl Protein Viewer:ENSP00000343683.4Re-query CCDS DB by Nucleotide ID:ENST00000345009Re-query CCDS DB by Protein ID:ENSP00000343683
Original member Current member EBI,WTSI ENST00000420646.6 ENSP00000396241.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420646.6Link to Ensembl Protein Viewer:ENSP00000396241.2Re-query CCDS DB by Nucleotide ID:ENST00000420646Re-query CCDS DB by Protein ID:ENSP00000396241
Original member Current member NCBI NM_007308.2 NP_009292.1 Accepted alive Link to Nucleotide Sequence:NM_007308.2Link to Protein Sequence:NP_009292.1Re-query CCDS DB by Nucleotide ID:NM_007308Re-query CCDS DB by Protein ID:NP_009292Link to BLAST:NP_009292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009292.1 112 P37840-2 112 100% 0 0

Chromosomal Locations for CCDS 43252.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 89726628 89726660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 89822246 89822388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 89828143 89828184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 89835547 89835667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (339 nt):
ATGGATGTATTCATGAAAGGACTTTCAAAGGCCAAGGAGGGAGTTGTGGCTGCTGCTGAGAAAACCAAAC
AG
GGTGTGGCAGAAGCAGCAGGAAAGACAAAAGAGGGTGTTCTCTATGTAGGCTCCAAAACCAAGGAGGG
A
GTGGTGCATGGTGTGGCAACAGTGGCTGAGAAGACCAAAGAGCAAGTGACAAATGTTGGAGGAGCAGTG
GTG
ACGGGTGTGACAGCAGTAGCCCAGAAGACAGTGGAGGGAGCAGGGAGCATTGCAGCAGCCACTGGCT
TT
GTCAAAAAGGACCAGTTGGGCAAGGAAGGGTATCAAGACTACGAACCTGAAGCCTAA


Translation (112 aa):
MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAV
V
TGVTAVAQKTVEGAGSIAAATGFVKKDQLGK
EGYQDYEPEA



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser