NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42990.1 Public Homo sapiens 22 GGT5 24 110 108 CCDS HistoryNCBI Gene:2687Re-query CCDS DB by CCDS ID:42990.1Re-query CCDS DB by GeneID:2687See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42990.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398292.3 ENSP00000381340.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398292.3Link to Ensembl Protein Viewer:ENSP00000381340.3Re-query CCDS DB by Nucleotide ID:ENST00000398292Re-query CCDS DB by Protein ID:ENSP00000381340
Original member Current member NCBI NM_001099781.2 NP_001093251.1 Accepted alive Link to Nucleotide Sequence:NM_001099781.2Link to Protein Sequence:NP_001093251.1Re-query CCDS DB by Nucleotide ID:NM_001099781Re-query CCDS DB by Protein ID:NP_001093251Link to BLAST:NP_001093251.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093251.1 587 P36269-3 587 100% 0 0

Chromosomal Locations for CCDS 42990.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 24219970 24220116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24224996 24225106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24225245 24225414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24225546 24225652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24226076 24226266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24226631 24226767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24231384 24231530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24232051 24232208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24232823 24233018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24233498 24233593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24233874 24234004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24244553 24244725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1764 nt):
ATGGCCCGGGGCTACGGGGCCACGGTCAGCCTAGTCCTGCTGGGTCTGGGGCTGGCGCTGGCTGTCATTG
TGCTGGCTGTGGTCCTCTCTCGACACCAGGCCCCATGTGGCCCCCAGGCCTTTGCCCACGCTGCTGTTGC
CGCCGACTCCAAGGTCTGCTCGGATATTGGACGAGCCATCCTCCAGCAGCAGGGCTCACCCGTGGATGCC
ACCATCGCGGCTCTGGTCTGCACCAGCGTCGTCAACCCTCAGAGCATGGGCCTGGGCGGAGGGGTCATCT
TCACCATCTACAATGTGACAACAGGGAAGGTGGAGGTCATCAATGCCCGGGAGACGGTGCCGGCCAGCCA
CGCCCCGAGCCTGCTGGACCAGTGTGCACAGGCTCTGCCACTGGGCACAGGGGCCCAGTGGATCGGGGTG
CCCGGGGAGCTCCGTGGCTATGCCGAGGCCCACCGCCGCCATGGCCGCCTGCCCTGGGCGCAGCTGTTCC
AGCCCACCATCGCGCTGCTCCGAGGGGGGCATGTGGTGGCCCCTGTCCTCAGCCGTTTCCTGCACAACAG
CATCCTGCGGCCTTCCTTGCAGGCGTCAACCCTGCGCCAGCTCTTCTTCAACGGGACAGAACCCCTGAGG
CCTCAGGACCCACTCCCATGGCCTGCACTGGCCACCACCCTGGAGACCGTGGCCACAGAGGGCGTGGAGG
TCTTCTACACGGGGAGGCTGGGCCAGATGCTGGTGGAGGACATTGCCAAGGAAGGGAGCCAGCTGACGCT
GCAGGACCTGGCCAAGTTCCAGCCCGAGGTGGTGGATGCCCTGGAGGTGCCCCTGGGGGACTATACCCTG
TACTCACCACCGCCGCCTGCAGGGGGTGCCATTCTCAGCTTTATCCTCAACGTGCTAAGAGGGTTCAACT
TCTCAACAGAGTCTATGGCCAGGCCTGAAGGGAGGGTGAACGTGTACCACCACCTTGTAGAGACGCTCAA
GTTTGCCAAGGGGCAGAGGTGGAGGCTGGGGGACCCTCGAAGCCACCCGAAGCTCCAGAATGCCTCCCGG
GACCTGCTGGGGGAGACCCTGGCCCAGCTCATCCGCCAACAGATCGATGGCCGGGGGGACCACCAGCTCA
GCCACTACAGCTTGGCCGAGGCCTGGGGCCACGGGACAGGCACGTCCCATGTGTCTGTGCTGGGGGAGGA
TGGCAGCGCCGTGGCTGCCACCAGCACCATCAACACACCCTTTGGAGCGATGGTGTATTCACCACGGACA
GGCATCATCCTCAACAACGAGCTCCTGGACTTATGCGAGCGATGCCCCCGGGGTTCCGGCACCACCCCCT
CACCTGCAGTGAGTGGAGACAGGGTGGGTGGAGCTCCCGGAAGGTGCTGGCCCCCAGTTCCAGGCGAGCG
TTCCCCATCCTCCATGGTGCCCTCCATCTTGATCAACAAAGCCCAGGGGTCGAAGCTAGTGATTGGCGGG
GCTGGCGGGGAGCTCATCATCTCTGCTGTGGCCCAGGCCATCATGAGCAAGCTGTGGCTTGGCTTTGACC
TGAGAGCGGCCATTGCAGCCCCCATCCTGCATGTCAACAGCAAGGGCTGTGTGGAGTACGAGCCCAACTT
CAGCCAGGAGGTGCAGAGGGGACTCCAAGACCGTGGCCAGAACCAGACCCAGAGGCCCTTCTTCCTGAAC
GTGGTCCAGGCTGTGTCCCAGGAGGGGGCCTGTGTGTACGCCGTCTCGGACCTGAGGAAGAGTGGGGAGG
CCGCAGGCTACTAA

Translation (587 aa):
MARGYGATVSLVLLGLGLALAVIVLAVVLSRHQAPCGPQAFAHAAVAADSKVCSDIGRAILQQQGSPVDA
TIAALVCTSVVNPQSMGLGGGVIFTIYNVTTGKVEVINARETVPASHAPSLLDQCAQALPLGTGAQWIGV
PGELRGYAEAHRRHGRLPWAQLFQPTIALLRGGHVVAPVLSRFLHNSILRPSLQASTLRQLFFNGTEPLR
PQDPLPWPALATTLETVATEGVEVFYTGRLGQMLVEDIAKEGSQLTLQDLAKFQPEVVDALEVPLGDYTL
YSPPPPAGGAILSFILNVLRGFNFSTESMARPEGRVNVYHHLVETLKFAKGQRWRLGDPRSHPKLQNASR
DLLGETLAQLIRQQIDGRGDHQLSHYSLAEAWGHGTGTSHVSVLGEDGSAVAATSTINTPFGAMVYSPRT
GIILNNELLDLCERCPRGSGTTPSPAVSGDRVGGAPGRCWPPVPGERSPSSMVPSILINKAQGSKLVIGG
AGGELIISAVAQAIMSKLWLGFDLRAAIAAPILHVNSKGCVEYEPNFSQEVQRGLQDRGQNQTQRPFFLN
VVQAVSQEGACVYAVSDLRKSGEAAGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH