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Report for CCDS42851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42851.1 Public Homo sapiens 20 DNAAF9 24 110 108 CCDS HistoryNCBI Gene:25943Re-query CCDS DB by CCDS ID:42851.1Re-query CCDS DB by GeneID:25943See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42851.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252032.10 ENSP00000252032.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252032.10Link to Ensembl Protein Viewer:ENSP00000252032.9Re-query CCDS DB by Nucleotide ID:ENST00000252032Re-query CCDS DB by Protein ID:ENSP00000252032
Original member Current member NCBI NM_001009984.3 NP_001009984.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001009984.3Link to Protein Sequence:NP_001009984.1Re-query CCDS DB by Nucleotide ID:NM_001009984Re-query CCDS DB by Protein ID:NP_001009984Link to BLAST:NP_001009984.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009984.1 1177 Q5TEA3 1177 100% 0 0

Chromosomal Locations for CCDS 42851.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3252572 3252684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3253726 3253819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3255219 3255284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3256006 3256211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3259480 3259554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3259922 3260028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3264438 3264524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3270427 3270562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3278912 3278949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3281641 3281766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3287632 3287790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3290129 3290217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3294139 3294256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3294528 3294629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3296861 3296949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3298029 3298175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3304440 3304543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3315033 3315120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3315735 3315785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3316723 3316793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3318289 3318400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3322217 3322262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3322652 3322696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3324892 3324968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3326197 3326284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3330646 3330682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3332280 3332361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3340504 3340639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3343676 3343731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3348525 3348623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3359516 3359593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3374048 3374154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3375030 3375126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3376178 3376302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3381379 3381498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3382427 3382506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3407475 3407557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3534 nt):
ATGGACGTGTACCCCCCGCGCCGGCAGGGGCTGCCCCGCGCTCGGTCCCCTGGCGGCTCCAGCCGCGGGT
CACCCTCCGTCAGCTGCAGTCGACTTCGGCAGGTTCAGAGCATCCTGACCCAGAGCAGCAAGTCTCGGCC
GGATGGGATCCTCTGCATCCTAGGAATCGATAGCAGGTACAATGAAGGCTGCAGAGAGCTGGCAAATTAT
CTTCTATTTGGTTTGTACAATCAGAATACCAGTGATTTTGAGAAAACGGGATTTTCTGAAGAAGTACTAG
ATGATGTAATTATATTGATTAAATCGGATAGCGTCCATCTGTACTGTAATCCTGTAAACTTTCGCTATCT
CTTACCTTATGTGGCACATTGGAGAAATCTGCATTTCCACTGCATGACCGAAAATGAGTATGAAGATGAA
GAAGCCGCAGAAGAATTTAAAATTACCAGCTTTGTGGACATGGTTCGAGACTGTAGTAGAATTGGCATTC
CTTACAGCTCCCAAGGTCACTTGCAGATATTTGATATGTTTGTGGTGGAGAAATGGCCAATTGTACAGGC
CTTTGCACTTGAGGGCATTGGAGGGGATGGATTTTTTACCATGAAATATGAGTTGCAGGATGTGAGTTTG
AATCTATGGAATGTCTACAGCAAGATGGATCCTATGTCTCTGGAGAGTTTGCTTTCAGATGATTTGGTGG
CTTTTGAACATCAGTGGACTAGCTTCTTCGCTAATTTTGACACAGAAATTCCTTTCCTGCTAGAACTTTC
AGAATCTCAGGCGGGTGAGCCATTCAGAAGTTATTTCAGTCATGGAATGATCTCTAGCCATATAACTGAA
AACAGCCCTAACCGGCAGCCATTTGTTCTCTTTGGTAATCACTCCACACGAGAAAACCTGAATGCTGGCA
ACTTTAACTTCCCTTCTGAAGGACATCTGGTACGAAGCACTGGTCCCGGCGGGAGCTTTGCCAAGCACAT
GGTAGCCCAGTGTGTCTCACCAAAGGGACCTCTTGCTTGTTCGAGAACATACTTTTTTGGAGCTACTCAT
GTTCCTTACTTGGGTGGTGACAGCAAGCTGCCCAAGAAAACTGAACAAATTAGGCTATTGTCCCAGATAT
ATGCTGCTGTTATTGAGGCTGTTTTGGCTGGCATTGCATGTTATGCTAAAACTTCCAGTCTAACAAAGGC
CAAGGAGGTAGCAGAGCAAACTCTGGGATCTGGGTTAGATTCCTTTGAGTTGATTCCGTTTAAGGCAGCC
CTGCGCTCCAAGATGACTTTTCATATACATGCTGTGAATAATCAGGGAAGAATTGTACCGCTGGACAGTG
AAGATAGCTTATCCTTTGTGAAGACGGCTTGTATGGCCGTCTATGACATTCCTGACTTACTGGGAGGCAA
TGGTTGTTTAGGATCTGTGGTTTTCTCTGAATCATTTTTGACTTCTCAGATCTTAGTTAAAGAAAAGGAT
GGCACTGTTACCACAGAAACCAGCTCCGTAGTCCTGACTGCTGCTGTACCCAGATTCTGCTCCTGGCTGG
TGGAAGATAATGAAGTAAAATTGTCTGAGAAAACCCAGCAAGCAGTGAGGGGGGATGAGTCTTTCCTGGG
CACTTATCTAACAGGAGGAGAAGGAGCATATCTTTATTCCAGCAATCTACAGTCCTGGCCTGAGGAAGGG
AATGTTCATTTCTTCTCTAGTGGCCTTCTGTTTTCTCACTGTCGTCATAGAAGTATCATCATTTCCAAGG
ATCACATGAATTCCATTTCCTTCTATGATGGGGATTCCACCAGTACTGTTGCTGCTCTTCTCATAGACTT
CAAAAGCTCATTGCTTCCTCACCTCCCAGTTCATTTCCATGGATCAAGCAATTTTCTGATGATTGCCCTT
TTCCCCAAATCGAAGATATACCAAGCATTTTACTCAGAGGTCTTCTCCCTCTGGAAACAGCAGGATAACT
CAGGGATCTCTTTAAAAGTGATCCAGGAAGATGGATTATCTGTGGAACAAAAGAGATTGCACTCCAGTGC
ACAGAAGCTCTTCAGTGCCCTGAGCCAGCCTGCTGGGGAGAAACGGAGTTCCCTAAAGTTACTCTCAGCC
AAACTCCCAGAGCTGGACTGGTTTCTCCAGCATTTCGCCATCAGCAGCATTAGCCAGGAGCCTGTGATGC
GGACCCATCTTCCTGTGCTGCTGCAGCAAGCTGAAATCAACACTACTCACAGAATAGAAAGTGACAAGGT
AATTATCAGCATTGTAACCGGCCTCCCAGGCTGTCACGCTAGCGAGCTCTGTGCTTTTCTGGTCACTCTG
CATAAGGAATGTGGCAGATGGATGGTGTATCGCCAAATCATGGACAGCTCTGAATGTTTTCATGCTGCAC
ACTTCCAGAGATACCTTTCCAGTGCCCTAGAGGCCCAGCAGAACCGCTCTGCGCGCCAGTCAGCCTACAT
CCGCAAGAAGACCAGACTGCTGGTGGTGTTACAAGGCTACACAGATGTTATTGATGTTGTCCAGGCCCTG
CAGACCCACCCAGACTCAAATGTCAAGGCCTCCTTCACCATTGGTGCCATCACAGCATGTGTGGAGCCCA
TGAGCTGCTACATGGAGCACAGATTTCTCTTTCCTAAATGTCTTGACCAGTGTTCACAAGGCCTGGTGAG
TAACGTGGTATTCACCAGTCACACCACGGAGCAGCGGCACCCTCTCCTTGTTCAGCTGCAGAGCCTCATC
AGGGCTGCCAATCCTGCTGCAGCCTTCATTCTTGCAGAAAATGGGATTGTCACCAGGAATGAAGACATTG
AGCTGATTCTCTCAGAAAACAGTTTTTCAAGTCCTGAGATGCTACGATCTCGATATTTAATGTATCCTGG
CTGGTATGAAGGTAAATTGAATGCTGGATCAGTCTATCCCCTAATGGTTCAGATCTGCGTATGGTTTGGC
CGTCCCTTGGAGAAGACTCGCTTTGTGGCCAAATGTAAAGCAATTCAGTCCTCCATCAAGCCAAGTCCCT
TCTCCGGAAACATCTACCACATCCTGGGCAAAGTGAAGTTTTCAGACTCTGAGAGGACCATGGAGGTCTG
CTACAACACACTGGCCAACTCCTTGAGCATCATGCCAGTTTTGGAAGGACCCACACCACCACCAGACTCC
AAAAGCGTATCTCAAGACAGCAGCGGGCAGCAGGAGTGCTACCTTGTGTTCATCGGCTGCTCCCTGAAGG
AAGACAGCATCAAGGACTGGCTGCGGCAGTCAGCTAAGCAGAAGCCTCAGAGGAAAGCCCTGAAGACCAG
GGGGATGCTGACGCAACAGGAGATCAGGAGCATCCACGTAAAACGCCACTTGGAACCCCTACCTGCAGGC
TACTTTTATAATGGCACCCAATTTGTTAACTTCTTTGGTGACAAAACTGATTTTCACCCACTCATGGACC
AGTTCATGAATGACTACGTGGAAGAAGCCAACCGGGAAATTGAGAAGTATAACCAGGAGCTGGAACAGCA
GGAGTATCATGACCTCTTTGAGCTGAAGCCCTAG

Translation (1177 aa):
MDVYPPRRQGLPRARSPGGSSRGSPSVSCSRLRQVQSILTQSSKSRPDGILCILGIDSRYNEGCRELANY
LLFGLYNQNTSDFEKTGFSEEVLDDVIILIKSDSVHLYCNPVNFRYLLPYVAHWRNLHFHCMTENEYEDE
EAAEEFKITSFVDMVRDCSRIGIPYSSQGHLQIFDMFVVEKWPIVQAFALEGIGGDGFFTMKYELQDVSL
NLWNVYSKMDPMSLESLLSDDLVAFEHQWTSFFANFDTEIPFLLELSESQAGEPFRSYFSHGMISSHITE
NSPNRQPFVLFGNHSTRENLNAGNFNFPSEGHLVRSTGPGGSFAKHMVAQCVSPKGPLACSRTYFFGATH
VPYLGGDSKLPKKTEQIRLLSQIYAAVIEAVLAGIACYAKTSSLTKAKEVAEQTLGSGLDSFELIPFKAA
LRSKMTFHIHAVNNQGRIVPLDSEDSLSFVKTACMAVYDIPDLLGGNGCLGSVVFSESFLTSQILVKEKD
GTVTTETSSVVLTAAVPRFCSWLVEDNEVKLSEKTQQAVRGDESFLGTYLTGGEGAYLYSSNLQSWPEEG
NVHFFSSGLLFSHCRHRSIIISKDHMNSISFYDGDSTSTVAALLIDFKSSLLPHLPVHFHGSSNFLMIAL
FPKSKIYQAFYSEVFSLWKQQDNSGISLKVIQEDGLSVEQKRLHSSAQKLFSALSQPAGEKRSSLKLLSA
KLPELDWFLQHFAISSISQEPVMRTHLPVLLQQAEINTTHRIESDKVIISIVTGLPGCHASELCAFLVTL
HKECGRWMVYRQIMDSSECFHAAHFQRYLSSALEAQQNRSARQSAYIRKKTRLLVVLQGYTDVIDVVQAL
QTHPDSNVKASFTIGAITACVEPMSCYMEHRFLFPKCLDQCSQGLVSNVVFTSHTTEQRHPLLVQLQSLI
RAANPAAAFILAENGIVTRNEDIELILSENSFSSPEMLRSRYLMYPGWYEGKLNAGSVYPLMVQICVWFG
RPLEKTRFVAKCKAIQSSIKPSPFSGNIYHILGKVKFSDSERTMEVCYNTLANSLSIMPVLEGPTPPPDS
KSVSQDSSGQQECYLVFIGCSLKEDSIKDWLRQSAKQKPQRKALKTRGMLTQQEIRSIHVKRHLEPLPAG
YFYNGTQFVNFFGDKTDFHPLMDQFMNDYVEEANREIEKYNQELEQQEYHDLFELKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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