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Report for CCDS42797.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42797.1 Public Homo sapiens 2 NIF3L1 24 110 108 CCDS HistoryNCBI Gene:60491Re-query CCDS DB by CCDS ID:42797.1Re-query CCDS DB by GeneID:60491See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42797.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359683.8 ENSP00000352711.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359683.8Link to Ensembl Protein Viewer:ENSP00000352711.4Re-query CCDS DB by Nucleotide ID:ENST00000359683Re-query CCDS DB by Protein ID:ENSP00000352711
Original member Current member NCBI NM_001142355.1 NP_001135827.1 Accepted alive Link to Nucleotide Sequence:NM_001142355.1Link to Protein Sequence:NP_001135827.1Re-query CCDS DB by Nucleotide ID:NM_001142355Re-query CCDS DB by Protein ID:NP_001135827Link to BLAST:NP_001135827.1
Original member Current member NCBI NM_001369443.1 NP_001356372.1 Accepted alive Link to Nucleotide Sequence:NM_001369443.1Link to Protein Sequence:NP_001356372.1Re-query CCDS DB by Nucleotide ID:NM_001369443Re-query CCDS DB by Protein ID:NP_001356372Link to BLAST:NP_001356372.1
Original member Current member NCBI NM_021824.3 NP_068596.2 Accepted alive Link to Nucleotide Sequence:NM_021824.3Link to Protein Sequence:NP_068596.2Re-query CCDS DB by Nucleotide ID:NM_021824Re-query CCDS DB by Protein ID:NP_068596Link to BLAST:NP_068596.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135827.1 350 Q9GZT8-2 350 100% 0 0
NP_001356372.1 350 Q9GZT8-2 350 100% 0 0
NP_068596.2 350 Q9GZT8-2 350 100% 0 0

Chromosomal Locations for CCDS 42797.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 200892025 200892379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200893246 200893408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200895264 200895390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200897076 200897214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200899385 200899468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200903494 200903678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGATTTGAAGGCTCTCCTTTCTTCCTTGAATGACTTTGCATCCCTCTCGTTTGCTGAGAGTTGGGACA
ATGTTGGATTACTGGTGGAACCAAGCCCACCACATACTGTAAATACACTCTTCCTGACCAATGACCTGAC
TGAGGAAGTGATGGAGGAGGTGCTGCAAAAGAAGGCAGACCTCATTCTCTCCTACCATCCGCCTATCTTC
CGACCCATGAAGCGCATAACCTGGAACACATGGAAGGAGCGCCTGGTGATCCGGGCTCTGGAGAACAGAG
TCGGTATCTACTCTCCTCATACAGCCTATGATGCTGCGCCCCAGGGCGTCAACAACTGGTTGGCTAAAGG
GCTTGGAGCTTGTACCTCCAGGCCCATACATCCTTCCAAAGCTCCCAACTACCCTACAGAGGGAAACCAC
CGAGTAGAATTCAACGTTAACTACACCCAAGACCTGGACAAAGTCATGTCTGCAGTGAAAGGAATTGACG
GTGTTTCTGTCACTTCTTTTTCTGCTAGGACTGGTAATGAGGAACAAACACGGATTAATCTGAATTGTAC
TCAGAAGGCTTTGATGCAGGTGGTAGATTTTCTTTCCCGGAACAAACAACTTTATCAGAAGACGGAAATT
CTGTCACTGGAGAAGCCTTTGCTTCTACATACTGGAATGGGACGGTTATGCACACTGGATGAATCTGTCT
CCCTGGCAACCATGATTGATCGAATAAAAAGACACCTAAAACTATCTCATATTCGCTTAGCCCTTGGGGT
GGGGAGAACCTTAGAGTCTCAAGTCAAAGTCGTGGCCCTGTGTGCTGGTTCTGGGAGCAGCGTTCTGCAG
GGTGTTGAGGCTGACCTTTACCTCACAGGTGAGATGTCCCATCATGATACTTTGGATGCTGCTTCCCAAG
GAATAAATGTCATCCTCTGTGAACACAGCAACACTGAACGAGGCTTTCTTTCTGACCTTCGAGATATGCT
GGATTCTCACTTGGAGAATAAGATAAATATTATCCTATCAGAGACTGACAGGGACCCTCTTCAGGTGGTA
TAA

Translation (350 aa):
MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIF
RPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNYPTEGNH
RVEFNVNYTQDLDKVMSAVKGIDGVSVTSFSARTGNEEQTRINLNCTQKALMQVVDFLSRNKQLYQKTEI
LSLEKPLLLHTGMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQ
GVEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGFLSDLRDMLDSHLENKINIILSETDRDPLQVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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