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Report for CCDS42181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42181.1 Reviewed, update pending Homo sapiens 16 ACD 22 109 92 CCDS HistoryNCBI Gene:65057Re-query CCDS DB by CCDS ID:42181.1Re-query CCDS DB by GeneID:65057See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 42181.1
This CCDS was updated to trim the coding region at the 5' end, which shortens the N-terminus of the protein by 86 amino acid residues. The update is supported by conservation data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000393919.8 ENSP00000377496.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393919.8Link to Ensembl Protein Viewer:ENSP00000377496.4Re-query CCDS DB by Nucleotide ID:ENST00000393919Re-query CCDS DB by Protein ID:ENSP00000377496
Original member Current member EBI,WTSI ENST00000620338.4 ENSP00000483117.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620338.4Link to Ensembl Protein Viewer:ENSP00000483117.1Re-query CCDS DB by Nucleotide ID:ENST00000620338Re-query CCDS DB by Protein ID:ENSP00000483117
Original member NCBI NM_001082486.1 NP_001075955.1 Updated not alive Link to Nucleotide Sequence:NM_001082486.1Link to Protein Sequence:NP_001075955.1Re-query CCDS DB by Nucleotide ID:NM_001082486Re-query CCDS DB by Protein ID:NP_001075955
Current member NCBI NM_001082486.2 NP_001075955.2 Pending alive Link to Nucleotide Sequence:NM_001082486.2Link to Protein Sequence:NP_001075955.2Re-query CCDS DB by Nucleotide ID:NM_001082486Re-query CCDS DB by Protein ID:NP_001075955Link to BLAST:NP_001075955.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075955.2 458 Q96AP0-3 458 100% 0 0

Chromosomal Locations for CCDS 42181.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67657606 67657684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67657762 67657853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67657986 67658362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67658555 67658641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67658720 67658816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67658928 67659079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67659229 67659263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67659375 67659419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67659537 67659613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67659702 67659795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67659903 67660045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67660122 67660478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGCCTGGCCGCTGTCAGAGTGACGCCGCGATGAGAGTAAACGGGCCAGCATCCCGTGCACCAGCGGGGT
GG
ACCAGCGGGAGTCTGCACACAGGCCCCCGAGCAGGACGCCCTCGTGCGCAGGCGCGGGGTGTACGTGG
G
CGGGGCCTCCTCCTCCGGCCCCGCCCAGCGAAGGAGCTTCCTCTTCCGAGGAAAGGCGGGGCCTGGGCG
CCC
GCGGGAAACCCGGGCCCGTTGCATCCGCTGGGTGTAGCCGTGGGGATGGCAGGTTCGGGGAGGCTGG
TC
CTACGGCCCTGGATTCGGGAGCTGATTCTGGGGTCAGAGACACCCTCCAGTCCACGAGCCGGGCAGCT
G
CTTGAGGTACTACAGGACGCCGAGGCCGCGGTCGCGGGCCCATCCCACGCCCCTGATACGTCCGACGTC
GGG
GCCACGCTGCTTGTGTCTGACGGGACCCACAGTGTCCGATGCCTGGTGACGCGGGAGGCCCTGGACA
CC
TCGGACTGGGAGGAGAAGGAGTTCGGCTTCCGCGGGACAGAGGGCCGGCTGCTGCTGCTGCAGGACTG
C
GGGGTTCATGTCCAGGTCGCTGAGGGCGGCGCGCCCGCAGAGTTCTATCTCCAGGTGGACCGCTTCAGC
CTG
CTGCCCACGGAGCAGCCCCGGCTACGGGTGCCTGGTTGCAACCAAGACTTAGATGTTCAGAAAAAGC
TC
TATGACTGCCTTGAGGAGCACCTTTCAGAGTCCACCTCGTCCAATGCAGGCCTATCACTGTCCCAGCT
T
CTGGATGAAATGCGGGAGGACCAGGAGCATCAGGGGGCACTCGTGTGCCTGGCTGAAAGCTGCCTGACA
CTG
GAGGGCCCTTGCACAGCACCCCCTGTCACCCACTGGGCTGCCTCACGATGCAAGGCCACGGGAGAAG
CT
GTGTACACTGTCCCCAGCTCAATGCTGTGCATCTCTGAGAATGACCAGCTAATTCTGAGCTCTCTAGG
C
CCCTGTCAGAGGACACAGGGCCCTGAGCTGCCCCCACCAGACCCGGCTCTGCAGGACCTATCTCTGACC
CTC
ATAGCCTCTCCTCCTTCCTCACCCAGTTCCTCAGGAACCCCGGCCTTACCCGGCCACATGTCATCCG
AG
GAAAGTGGTACCAGCATCAGCCTTCTGCCTGCCCTGTCCTTGGCTGCTCCAGACCCAGGGCAGAGAAG
C
AGCTCCCAGCCCTCACCAGCCATCTGCTCAGCCCCTGCCACCCTGACCCCCAGGTCCCCACACGCCAGC
CGT
ACCCCCAGCTCCCCACTCCAGAGCTGCACTCCCAGTCTCTCACCCCGTAGCCATGTCCCCAGTCCAC
AC
CAGGCTCTTGTGACCAGGCCCCAGAAACCTAGCCTGGAGTTCAAGGAGTTTGTAGGGTTGCCCTGCAA
G
AATCGGCCGCCTTTTCCCAGGACCGGAGCTACCAGGGGAGCCCAGGAGCCCTGCTCTGTCTGGGAACCC
CCA
AAGAGGCATCGTGATGGTTCTGCCTTCCAGTATGAGTATGAGCCACCCTGCACGTCCCTCTGTGCTC
GG
GTCCAAGCTGTCAGGCTTCCTCCCCAGCTCATGGCCTGGGCCTTGCACTTTCTGATGGATGCACAGCC
A
GGGTCTGAGCCAACTCCGATGTGA


Translation (544 aa):
MPGRCQSDAAMRVNGPASRAPAGWTSGSLHTGPRAGRPRAQARGVRGRGLLLRPRPAKELPLPRKGGAWA
P
AGNPGPLHPLGVAVGMAGSGRLVLRPWIRELILGSETPSSPRAGQLLE
VLQDAEAAVAGPSHAPDTSDV
G
ATLLVSDGTHSVRCLVTREALDTSD
WEEKEFGFRGTEGRLLLLQDCGVHVQVAEGGAPAEFYLQVDRFS
L
LPTEQPRLRVPG
CNQDLDVQKKLYDCLEEHLSESTSSNAGLSLSQLLDEMREDQEHQGALVCLAESCLT
L
EGPCTAPPVTHWAASRCKAT
GEAVYTVPSSMLCISENDQLILSSLGPCQRTQGPELPPPDPALQDLSLT
L
IASPPSSPSSS
GTPALPGHMSSEESGTSISLLPALSLAAPDPGQRSSSQPSPAICSAPATLTPRSPHAS
R
TPSSPLQSCTPSLSPRSHVPSPHQALVTRPQKPSLEFKEFVGLPCKNRPPFPRTGATRGAQEPCSVW
EP
P
KRHRDGSAFQYEYEPPCTSLCARVQAV
RLPPQLMAWALHFLMDAQPGSEPTPM



Links Key
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