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Report for CCDS4195.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4195.1 Public Homo sapiens 5 FAM13B 24 110 108 CCDS HistoryNCBI Gene:51306Re-query CCDS DB by CCDS ID:4195.1Re-query CCDS DB by GeneID:51306See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4195.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000033079.7 ENSP00000033079.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000033079.7Link to Ensembl Protein Viewer:ENSP00000033079.3Re-query CCDS DB by Nucleotide ID:ENST00000033079Re-query CCDS DB by Protein ID:ENSP00000033079
Original member Current member NCBI NM_001385921.1 NP_001372850.1 Accepted alive Link to Nucleotide Sequence:NM_001385921.1Link to Protein Sequence:NP_001372850.1Re-query CCDS DB by Nucleotide ID:NM_001385921Re-query CCDS DB by Protein ID:NP_001372850Link to BLAST:NP_001372850.1
Original member Current member NCBI NM_016603.4 NP_057687.2 Accepted alive Link to Nucleotide Sequence:NM_016603.4Link to Protein Sequence:NP_057687.2Re-query CCDS DB by Nucleotide ID:NM_016603Re-query CCDS DB by Protein ID:NP_057687Link to BLAST:NP_057687.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372850.1 915 Q9NYF5-1 915 100% 0 0
NP_057687.2 915 Q9NYF5-1 915 100% 0 0

Chromosomal Locations for CCDS 4195.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137940225 137940348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137941944 137942045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137942875 137943038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137943133 137943216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137945902 137945997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137946228 137946311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137948955 137949184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137952628 137952709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137953336 137953465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137954166 137954376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137959616 137959763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137960166 137960214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137962405 137962469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137985257 137985389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137987461 137987616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137988274 137988315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138006990 138007147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138011008 138011149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138011768 138011945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138018302 138018514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138018955 138019111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2748 nt):
ATGAGGAAGAGCTCCTCCCCTTCCTTGAGTAACTGCAACTCCGTTCTTGCTAACAAAATATTTGGAATTC
CACTTGATGAGCTGCAGCAGGGAGGACATCCAGACAATGAGGTTCCATTCATAGTCCGCCACGTTGTGGA
CTATATTGAGGAACATGGAGGTCTGGAGCAACAAGGACTTTTTCAAGTCAATGGAAATGCTGAGACAGTG
GAGTGGCTTCGGCAGAGATACGACAGCGGAGAAGAGGTGGATTTGGTTAAGGAAGCAGATGTTCCCTCAG
CTATTAGCCTTCTTAGATTTTTTCTTCAAGAACTTCCTGAACCTGTTATCCCTGGCAGTTTACATATTCA
CTTGATGCAGCTTTCTCAAGATTATAATAATGAAGATGAATTTGGAAGAAAGTTGAGGTTCCTCTTGCAA
CAGCTTCCACCTGTTAATTATAGTTTGTTAAAGTTTCTGTGTAGATTTTTAGCCAATGTAGCATCACATC
ATGAAGAAATTTGGTCCGCAAATTCTTTGGCTGCTGTCTTTGGTCCAGATGTCTTCCACATTTACACAGA
TGTGGAAGACATGAAAGAGCAAGAAATAGTGAGCAGGATAATGGCTGGACTTCTGGAAAACTACTATGAG
TTTTTTGAGAATGAAGAGGAAGATTTTTCATCTAATGATTTGAGTTCAATTACTGAACAGGTTAATGAAC
TTTCTGAGGAAGAAGAGGAAGATGAAAAGCTGGAACATATTGAAGAACTTCCAGAAGAGGGTGCAGAAAA
ATCAAATGACATGCCAGAGGTGGTACAATTAAGGATGACTGAAAACATCCTGGAATCAAATAGTGTTACG
GCAACAAGCACCCATATATCTCCCATCAGCATCCTACCAGCCTCTACAGATATTTTAGAAAGAACAATTA
GAGCAGCTGTGGAACAGCACCTTTTTGATCTTCAGAGCAGCATAGATCATGATCTTAAGAATTTACAACA
GCAAAGTGTGGTGTGTAATAATGAAGCAGAAAGTATTCATTGTGATGGGGAAGGATCTAATAACCAGATT
GATATTGCTGATGATATTATTAATGCCAGTGAAAGTAACAGAGACTGTTCAAAACCTGTGGCTAGCACTA
ATTTAGACAATGAAGCTATGCAGCAAGATTGTGTATTTGAGAATGAAGAAAATACCCAGTCTGTAGGTAT
ATTGTTAGAGCCATGCAGTGACCGTGGTGATAGTGAAGATGGCTGTCTTGAGAGGGAAGAATATTTGTTA
TTTGACAGTGATAAATTGTCACACTTGATTCTGGATTCTAGTAGCAAGATATGTGATTTGAATGCCAACA
CTGAATCAGAAGTACCAGGAGGTCAGAGTGTTGGTGTTCAAGGGGAAGCAGCGTGTGTCAGTATTCCACA
TTTAGATCTGAAGAATGTTTCTGATGGTGATAAATGGGAAGAGCCATTTCCTGCTTTTAAGTCTTGGCAG
GAGGACTCTGAGTCTGGAGAAGCTCAGCTGTCTCCACAAGCTGGAAGAATGAATCATCACCCCTTGGAAG
AGGACTGTCCTCCAGTATTATCACACCGCAGTTTAGATTTTGGTCAAAGCCAGCGTTTCCTACATGATCC
AGAAAAGTTGGATTCCTCATCTAAAGCACTGTCTTTTACTAGAATTCGAAGATCATCCTTTAGTTCAAAA
GATGAAAAGAGAGAGGACAGAACACCTTATCAGCTGGTCAAGAAACTTCAGAAGAAAATCAGACAATTTG
AGGAACAGTTTGAAAGGGAAAGAAATAGCAAGCCCTCCTACAGTGATATTGCTGCCAATCCAAAGGTATT
AAAATGGATGACAGAGCTTACAAAACTGCGGAAGCAAATTAAAGATGCAAAACACAAAAATTCTGATGGA
GAATTTGTACCTCAGACACGTCCACGTAGTAACACACTTCCAAAAAGCTTTGGCTCTTCTCTAGACCATG
AAGATGAAGAGAATGAAGATGAACCCAAGGTCATTCAGAAGGAGAAAAAACCATCTAAAGAAGCAACCCT
TGAACTTATTCTTAAAAGACTGAAAGAAAAACGTATTGAGAGGTGTCTTCCAGAAGATATCAAGAAAATG
ACCAAAGATCATTTGGTAGAAGAGAAAGCTTCTCTTCAGAAAAGTCTTCTTTACTATGAAAGTCAACATG
GAAGGCCGGTGACCAAGGAAGAAAGGCACATTGTTAAACCTCTCTATGATAGATACAGGCTTGTAAAACA
AATGCTGACAAGAGCTAGCATCACTCCTGTCCTTGGATCTCCATCCACCAAGCGAAGGGGTCAGATGTTA
CAGCCAATCATAGAAGGAGAAACTGCACATTTTTTTGAAGAAATCAAGGAGGAAGAAGAAGATGGTGTTA
ATCTGTCCTCTGAGTTAGGTGATATGTTGAAAACTGCAGTACAGGTACAGTCTTCATTAGAAAACTCTGA
ATCTGATGTTGAAGAAAATCAAGAAAAACTGGCTCTGGATCTCCGATTGTCAAGTTCTCGAGCAGCTTCT
ATGCCTGAATTATTGGAACAACTTTGGAAAGCCAGAGCTGAAAAAAAGAAACTACGCAAAACGTTGCGGG
AATTTGAAGAAGCATTTTATCAACAAAATGGAAGGAATGCCCAGAAAGAGGATCGTGTTCCAGTGCTTGA
GGAGTACAGAGAGTACAAGAAAATTAAAGCCAAGCTTAGGCTTCTTGAAGTTCTTATAAGCAAACAAGAT
TCTTCAAAATCCATATAA

Translation (915 aa):
MRKSSSPSLSNCNSVLANKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETV
EWLRQRYDSGEEVDLVKEADVPSAISLLRFFLQELPEPVIPGSLHIHLMQLSQDYNNEDEFGRKLRFLLQ
QLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDMKEQEIVSRIMAGLLENYYE
FFENEEEDFSSNDLSSITEQVNELSEEEEEDEKLEHIEELPEEGAEKSNDMPEVVQLRMTENILESNSVT
ATSTHISPISILPASTDILERTIRAAVEQHLFDLQSSIDHDLKNLQQQSVVCNNEAESIHCDGEGSNNQI
DIADDIINASESNRDCSKPVASTNLDNEAMQQDCVFENEENTQSVGILLEPCSDRGDSEDGCLEREEYLL
FDSDKLSHLILDSSSKICDLNANTESEVPGGQSVGVQGEAACVSIPHLDLKNVSDGDKWEEPFPAFKSWQ
EDSESGEAQLSPQAGRMNHHPLEEDCPPVLSHRSLDFGQSQRFLHDPEKLDSSSKALSFTRIRRSSFSSK
DEKREDRTPYQLVKKLQKKIRQFEEQFERERNSKPSYSDIAANPKVLKWMTELTKLRKQIKDAKHKNSDG
EFVPQTRPRSNTLPKSFGSSLDHEDEENEDEPKVIQKEKKPSKEATLELILKRLKEKRIERCLPEDIKKM
TKDHLVEEKASLQKSLLYYESQHGRPVTKEERHIVKPLYDRYRLVKQMLTRASITPVLGSPSTKRRGQML
QPIIEGETAHFFEEIKEEEEDGVNLSSELGDMLKTAVQVQSSLENSESDVEENQEKLALDLRLSSSRAAS
MPELLEQLWKARAEKKKLRKTLREFEEAFYQQNGRNAQKEDRVPVLEEYREYKKIKAKLRLLEVLISKQD
SSKSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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