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Report for CCDS4153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4153.1 Public Homo sapiens 5 SLC22A4 24 110 108 CCDS HistoryNCBI Gene:6583Re-query CCDS DB by CCDS ID:4153.1Re-query CCDS DB by GeneID:6583See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4153.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000200652.4 ENSP00000200652.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000200652.4Link to Ensembl Protein Viewer:ENSP00000200652.3Re-query CCDS DB by Nucleotide ID:ENST00000200652Re-query CCDS DB by Protein ID:ENSP00000200652
Original member Current member NCBI NM_003059.3 NP_003050.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003059.3Link to Protein Sequence:NP_003050.2Re-query CCDS DB by Nucleotide ID:NM_003059Re-query CCDS DB by Protein ID:NP_003050Link to BLAST:NP_003050.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003050.2 551 Q9H015 551 100% 0 0

Chromosomal Locations for CCDS 4153.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 132294617 132295009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132312161 132312264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132313614 132313768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132322184 132322355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132327277 132327403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132331756 132331850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132334718 132334932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132335818 132336000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132340565 132340700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132343760 132343835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGCGGGACTACGACGAGGTGATCGCCTTCCTGGGCGAGTGGGGGCCCTTCCAGCGCCTCATCTTCTTCC
TGCTCAGCGCCAGCATCATCCCCAATGGCTTCAATGGTATGTCAGTCGTGTTCCTGGCGGGGACCCCGGA
GCACCGCTGTCGAGTGCCGGACGCCGCGAACCTGAGCAGCGCCTGGCGCAACAACAGTGTCCCGCTGCGG
CTGCGGGACGGCCGCGAGGTGCCCCACAGCTGCAGCCGCTACCGGCTCGCCACCATCGCCAACTTCTCGG
CGCTCGGGCTGGAGCCGGGGCGCGACGTGGACCTGGGGCAGCTGGAGCAGGAGAGCTGCCTGGATGGCTG
GGAGTTCAGCCAGGACGTCTACCTGTCCACCGTCGTGACCGAGTGGAATCTGGTGTGTGAGGACAACTGG
AAGGTGCCCCTCACCACCTCCCTGTTCTTCGTAGGCGTGCTCCTCGGCTCCTTCGTGTCCGGGCAGCTGT
CAGACAGGTTTGGCAGGAAGAACGTTCTCTTCGCAACCATGGCTGTACAGACTGGCTTCAGCTTCCTGCA
GATTTTCTCCATCAGCTGGGAGATGTTCACTGTGTTATTTGTCATCGTGGGCATGGGCCAGATCTCCAAC
TATGTGGTAGCCTTCATACTAGGAACAGAAATTCTTGGCAAGTCAGTTCGTATTATATTCTCTACATTAG
GAGTGTGCACATTTTTTGCAGTTGGCTATATGCTGCTGCCACTGTTTGCTTACTTCATCAGAGACTGGCG
GATGCTGCTGCTGGCGCTGACGGTGCCGGGAGTGCTGTGTGTCCCGCTGTGGTGGTTCATTCCTGAATCT
CCCCGATGGCTGATATCCCAGAGAAGATTTAGAGAGGCTGAAGATATCATCCAAAAAGCTGCAAAAATGA
ACAACATAGCTGTACCAGCAGTGATATTTGATTCTGTGGAGGAGCTAAATCCCCTGAAGCAGCAGAAAGC
TTTCATTCTGGACCTGTTCAGGACTCGGAATATTGCCATAATGACCATTATGTCTTTGCTGCTATGGATG
CTGACCTCAGTGGGTTACTTTGCTCTGTCTCTGGATGCTCCTAATTTACATGGAGATGCCTACCTGAACT
GTTTCCTCTCTGCCTTGATTGAAATTCCAGCTTACATTACAGCCTGGCTGCTATTGCGAACCCTGCCCAG
GCGTTATATCATAGCTGCAGTACTGTTCTGGGGAGGAGGTGTGCTTCTCTTCATTCAACTGGTACCTGTG
GATTATTACTTCTTATCCATTGGTCTGGTCATGCTGGGAAAATTTGGGATCACCTCTGCTTTCTCCATGC
TGTATGTCTTCACTGCTGAGCTCTACCCAACCCTGGTCAGGAACATGGCGGTGGGGGTCACATCCACGGC
CTCCAGAGTGGGCAGCATCATTGCCCCCTACTTTGTTTACCTCGGTGCTTACAACAGAATGCTGCCCTAC
ATCGTCATGGGTAGTCTGACTGTCCTGATTGGAATCCTCACCCTTTTTTTCCCTGAAAGTTTGGGAATGA
CTCTTCCAGAAACCTTAGAGCAGATGCAGAAAGTGAAATGGTTCAGATCTGGGAAAAAAACAAGAGACTC
AATGGAGACAGAAGAAAATCCCAAGGTTCTAATAACTGCATTCTGA

Translation (551 aa):
MRDYDEVIAFLGEWGPFQRLIFFLLSASIIPNGFNGMSVVFLAGTPEHRCRVPDAANLSSAWRNNSVPLR
LRDGREVPHSCSRYRLATIANFSALGLEPGRDVDLGQLEQESCLDGWEFSQDVYLSTVVTEWNLVCEDNW
KVPLTTSLFFVGVLLGSFVSGQLSDRFGRKNVLFATMAVQTGFSFLQIFSISWEMFTVLFVIVGMGQISN
YVVAFILGTEILGKSVRIIFSTLGVCTFFAVGYMLLPLFAYFIRDWRMLLLALTVPGVLCVPLWWFIPES
PRWLISQRRFREAEDIIQKAAKMNNIAVPAVIFDSVEELNPLKQQKAFILDLFRTRNIAIMTIMSLLLWM
LTSVGYFALSLDAPNLHGDAYLNCFLSALIEIPAYITAWLLLRTLPRRYIIAAVLFWGGGVLLFIQLVPV
DYYFLSIGLVMLGKFGITSAFSMLYVFTAELYPTLVRNMAVGVTSTASRVGSIIAPYFVYLGAYNRMLPY
IVMGSLTVLIGILTLFFPESLGMTLPETLEQMQKVKWFRSGKKTRDSMETEENPKVLITAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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