NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI
WTSI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
RefSeq
UniGene

Report for CCDS41204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41204.1 Public Mus musculus X Zrsr2 21 106 86 CCDS HistoryNCBI Gene:22184Re-query CCDS DB by CCDS ID:41204.1Re-query CCDS DB by GeneID:22184See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41204.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000112289 ENSMUSP00000107908 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112289Link to Ensembl Protein Viewer:ENSMUSP00000107908Re-query CCDS DB by Nucleotide ID:ENSMUST00000112289Re-query CCDS DB by Protein ID:ENSMUSP00000107908
Original member Current member EBI,WTSI OTTMUST00000046577 OTTMUSP00000021033 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000046577Link to Vega Protein Viewer:OTTMUSP00000021033Re-query CCDS DB by Nucleotide ID:OTTMUST00000046577Re-query CCDS DB by Protein ID:OTTMUSP00000021033
Original member Current member NCBI NM_009453.3 NP_033479.2 Accepted alive Link to Nucleotide Sequence:NM_009453.3Link to Protein Sequence:NP_033479.2Re-query CCDS DB by Nucleotide ID:NM_009453Re-query CCDS DB by Protein ID:NP_033479Link to BLAST:NP_033479.2

Chromosomal Locations for CCDS 41204.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 163936289 163936965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 163939306 163939415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 163940119 163940174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 163943100 163943313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 163949260 163949378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 163950187 163950225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 163953570 163953656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 163954374 163954482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 163956472 163956553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 163957916 163957995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 163958274 163958326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGAAACGGCGGGGGCTACGGCGGACGCTACGGCGGGGCCGCAGAAACTGAGCCGTAAGAAGTACTTGG
CC
CTCCGGAAGAAGGAGAGACGTAAGAGGCGACGGCAGGCGCTCGCTCGGCTCAGAGAGGCAGAATTGGC
A
CAGAAAGAGGAGGAAGAAGATCCTCTTGCTGAAGAAAAACGACTAGAAGAAGAAAGGTTGTTAGAGGAA
GAG
AGGCAGAGACTGCATGAAGAATGGTTACTGAGGGAAGAAAAGGCACAAGAAGAATTCAGGGCAAAGA
AG
AAAAAAGAAGAGGAAGCTCGAAAACGGAAGGAAGAACTAGAGAGAAAGTTAAAGGCAGAATGGGAAGA
A
CAGCAGAGAAAAGAGCGAGAGGAAGAGGAGCAGAAACGACAAGAGAAGAGAGAAAGAGAGGAAGCTGTG
CAG
AAGATGCTGGATCAGGCTGAAAATGAGCTGGAAAATGGTGGCACCTGGCAGAACCCAGAACCGCCCA
TG
GATATAAGAGTACTGGAGAAAGATCGAGCCAACTGTCCGTTCTACAGCAAAACGGGAGCTTGCAGATT
T
GGAGATAGGTGTTCACGTAAACACAACTTCCCCACATCAAGTCCCACCTTGCTGATTAAGGGCATGTTT
ACA
ACATTTGGAATGGAGCAGTGTCGGAGGGATGACTATGACCCTGACTCAAGCCTAGAATTCAGTGAAG
AA
GAGATCTACCAACAGTTCCTAGACTTCTATTATGATGTCCTGCCTGAATTCAAGAGTGTGGGAAAAGT
G
ATTCAGTTTAAGGTCAGCTGCAACCTGGAACCTCATCTGAGGGGCAATGTGTATGTTCAGTACCAGTCG
GAA
GAAGACTGTCAAGCAGCCTTTTCTGTTTTTAATGGACGATGGTATGCAGGACGACAGCTCCAGTGTG
AA
TTCTGCCCAGTGACCCGGTGGAAAATGGCAATTTGTGGCTTATTTGAAGTCCAGCAGTGTCCAAGAGG
A
AAGCACTGCAACTTTCTTCACGTGTTCAGAAATCCCAACAATGAATATAGGGACGCTAATAGAGACCTC
TAC
CCGTCTCCAGATTGGACTAGCTCCTCCTTCGGTAAGAATTCAGAGAGGAGGGAAAGGGCCAGTCACT
AT
GATGAATACTATGGCAGGTCAAGGAGGAGGAGGAGGAGCCCGAGTCCCGACTTCTACAAGAGAAATGG
C
GAGTCTGACAGGAAGAGCAGTAGCAGACACAGGGTGAAGAAATCTCACAGATATGGAATGAAGAGTCGT
GAG
AGGCGCAGTTCACCCAGTAGAAGAAGAAAGGACCACAGTCCGGGCCCCTGGAGCCAGAGCAGGAGGA
GC
CACCGCAGCAGGAGTCGCAGTCGCAGCCGCAGCCGCAGCCGCAGTCGGACCCGTAGCCGAAGCCGGGG
C
CGGGGCCGGAGCAGGAGCCGGAGCCGGAGCAGGAGCAGGGGCCGGAGCAGGAGCAGGGGCCGGGGCAGC
GGC
AGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGAACCAGAGCAGGAGTTGGAGTCAAAGCCGGAGCC
GG
AGTAGTAGCTCGTCAAGGTCCAGAAGTCGTGGCAGGAGGTCAGGTAGTAGAGACAAAACCACCCAGAG
T
CCCAAATCTAAATAA


Translation (541 aa):
METAGATADATAGPQKLSRKKYLALRKKERRKRRRQALARLREAELAQKEEEEDPLAEEKRLEEERLLEE
E
RQRLHEEWLLREEKAQEEFRAKKKKEEEARKRKEELERKLKAEWEEQQRKEREEEEQKRQEKREREEAV
Q
KMLDQAENE
LENGGTWQNPEPPMDIRVLEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMF
T
TFGMEQCRRDDYDPDSSLEFSEEEIYQQFLDFYYDVLPEFKSVGKVIQFK
VSCNLEPHLRGNVYVQYQS
E
EDCQAAFSVFNGRWYAGRQLQCEFCPVTRWKMAIC
GLFEVQQCPRGKHCNFLHVFRNPNNEYRDANRDL
Y
PSPDWTSSSFGKNSERRERASHYDEYYGRSRRRRRSPSPDFYKRNGESDRKSSSRHRVKKSHRYGMKSR
E
RRSSPSRRRKDHSPGPWSQSRRSHRSRSRSRSRSRSRSRTRSRSRGRGRSRSRSRSRSRGRSRSRGRGS
G
RGRGRGRGRGRNQSRSWSQSRSRSSSSSRSRSRGRRSGSRDKTTQSPKSK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser