NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4099.1 Public Homo sapiens 5 PJA2 24 110 108 CCDS HistoryNCBI Gene:9867Re-query CCDS DB by CCDS ID:4099.1Re-query CCDS DB by GeneID:9867See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4099.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361189.7 ENSP00000354775.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361189.7Link to Ensembl Protein Viewer:ENSP00000354775.2Re-query CCDS DB by Nucleotide ID:ENST00000361189Re-query CCDS DB by Protein ID:ENSP00000354775
Original member Current member EBI ENST00000361557.4 ENSP00000355284.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361557.4Link to Ensembl Protein Viewer:ENSP00000355284.3Re-query CCDS DB by Nucleotide ID:ENST00000361557Re-query CCDS DB by Protein ID:ENSP00000355284
Original member Current member NCBI NM_014819.5 NP_055634.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014819.5Link to Protein Sequence:NP_055634.3Re-query CCDS DB by Nucleotide ID:NM_014819Re-query CCDS DB by Protein ID:NP_055634Link to BLAST:NP_055634.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055634.3 708 O43164-1 708 100% 0 0

Chromosomal Locations for CCDS 4099.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 109337231 109337356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109344190 109344311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109344705 109344819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109355915 109356026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109362840 109363022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109368561 109368746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109378204 109379254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109381503 109381703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109383403 109383433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2127 nt):
ATGTCACAGTACACTGAAAAGGAGCCAGCAGCAATGGACCAAGAATCTGGTAAGGCTGTCTGGCCCAAAC
CA
GCAGGAGGGTATCAGACAATTACAGGCAGGAGATATGGAAGAAGACATGCTTATGTCAGTTTTAAACC
A
TGTATGACCAGACATGAAAGAAGCTTAGGTCGGGCTGGTGATGACTATGAAGTGTTGGAACTAGATGAT
GTT
CCAAAGGAAAATTCCTCAGGTTCCAGTCCTTTGGATCAAGTTGATTCTTCTTTACCCAGTGAACCTA
TA
TTTGAAAAAAGTGAAACAGAAATTCCCACTTGTGGTTCAGCATTGAATCAAACCACTGAGAGCAGTCA
A
TCCTTTGTTGCAGTACATCACAGTGAGGAAGGCAGGGATACCTTAGGAAGCAGTACAAATCTTCATAAT
CAC
TCTGAGGGAGAGTATATTCCAGGAGCTTGTAGTGCTTCAAGTGTCCAAAATGGAATTGCATTGGTTC
AT
ACAGACTCTTATGATCCAGATGGCAAACATGGAGAAGATAATGACCATCTTCAACTTTCTGCAGAAGT
C
GTGGAAGGTAGTAGATACCAGGAATCATTAGGCAATACAGTATTTGAGTTGGAAAACAGAGAGGCAGAG
GCA
TACACTGGTCTTTCACCACCAGTTCCCTCATTTAACTGTGAAGTAAGAGATGAGTTTGAAGAGTTAG
AT
TCTGTACCATTAGTGAAAAGTTCTGCTGGTGATACTGAGTTTGTCCATCAGAATAGCCAGGAAATTCA
G
AGGTCTTCTCAAGATGAAATGGTTAGTACGAAACAACAAAATAATACTAGCCAGGAAAGACAGACAGAA
CAT
TCACCTGAAGATGCAGCCTGTGGTCCAGGGCATATTTGTAGTGAACAAAATACCAATGATAGGGAAA
AG
AACCATGGAAGTTCTCCTGAACAGGTAGTGAGGCCAAAAGTTAGAAAACTGATAAGTTCAAGCCAGGT
G
GACCAAGAAACAGGTTTTAATAGGCATGAGGCGAAACAAAGAAGTGTTCAAAGATGGAGAGAGGCTTTG
GAA
GTTGAGGAAAGTGGCTCAGATGACCTCTTAATAAAATGTGAAGAATATGATGGAGAGCATGACTGTA
TG
TTCTTGGATCCACCATACTCAAGAGTTATTACACAAAGGGAAACAGAAAATAACCAAATGACATCAGA
A
AGTGGAGCCACAGCAGGAAGGCAAGAGGTGGATAACACCTTTTGGAATGGCTGTGGAGATTATTACCAA
CTC
TATGACAAAGATGAAGATAGTTCTGAATGCAGTGATGGGGAATGGTCTGCTTCTTTGCCTCATCGAT
TT
TCTGGTACAGAAAAAGATCAATCCTCAAGTGATGAAAGCTGGGAGACTCTGCCAGGAAAAGATGAGAA
T
GAACCTGAGCTACAAAGTGATAGCAGTGGCCCTGAAGAAGAAAACCAAGAATTATCTCTTCAGGAAGGG
GAA
CAGACATCCTTGGAAGAGGGAGAAATTCCTTGGTTACAGTACAATGAAGTCAATGAAAGCAGCAGTG
AT
GAGGGAAATGAACCTGCCAATGAATTTGCACAGCCAGCTTTCATGTTGGATGGTAACAATAACCTGGA
G
GATGACTCCAGTGTGAGTGAAGACTTAGATGTGGATTGGAGCCTATTTGATGGCTTTGCAGATGGACTA
GGA
GTTGCTGAAGCTATTTCATATGTGGATCCTCAGTTCCTTACCTACATGGCACTAGAAGAACGCTTAG
CC
CAGGCTATGGAGACTGCTCTGGCCCATTTAGAGTCTCTTGCAGTGGATGTTGAGGTGGCCAATCCACC
A
GCTAGTAAGGAAAGCATTGATGGTCTTCCAGAGACCCTTGTTCTTGAAGATCACACTGCTATTGGTCAG
GAA
CAATGCTGTCCAATCTGTTGCAGTGAGTATATTAAGGATGATATAGCAACAGAGTTGCCCTGTCACC
AT
TTCTTTCACAAACCTTGTGTCTCAATTTGGCTACAAAAGTCGGGAACATGCCCTGTGTGCCGCCGTCA
T
TTCCCACCTGCGGTTATTGAAGCATCTGCAGCTCCTTCCTCTGAGCCTGATCCTGATGCCCCACCTTCA
AAT
GACAGTATTGCAGAAGCACCCTAA


Translation (708 aa):
MSQYTEKEPAAMDQESGKAVWPKPAGGYQTITGRRYGRRHAYVSFKPCMTRHERSLGRAGDDYEVLELDD
V
PKENSS
GSSPLDQVDSSLPSEPIFEKSETEIPTCGSALNQTTESSQSFVAVHHSEEGRDTLGSSTNLHN
H
SEGEYIPGACSASSVQNGIALVHTDSYDPDGKHGEDNDHLQLSAEVVEGSRYQESLGNTVFELENREAE
A
YTGLSPPVPSFNCEVRDEFEELDSVPLVKSSAGDTEFVHQNSQEIQRSSQDEMVSTKQQNNTSQERQTE
H
SPEDAACGPGHICSEQNTNDREKNHGSSPEQVVRPKVRKLISSSQVDQETGFNRHEAKQRSVQRWREAL
E
VEESGSDDLLIKCEEYDGEHDCMFLDPPYSRVITQRETENNQMTSESGATAGRQEVDNTFWNGCGDYYQ
L
YDKDED
SSECSDGEWSASLPHRFSGTEKDQSSSDESWETLPGKDENEPELQSDSSGPEEENQELSLQEG
E
QTSLEEGEIPWLQYNEVNESSSDEGNEPANEFAQPAFMLDGNNNLEDDSSVSEDLDVDW
SLFDGFADGL
G
VAEAISYVDPQFLTYMALEERLAQAME
TALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQ
E
QCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQK
SGTCPVCRRHFPPAVIEASAAPSSEPDPDAPPS
N
DSIAEAP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser