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Report for CCDS40884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40884.1 Public Mus musculus X Slc9a7 23 108 98 CCDS HistoryNCBI Gene:236727Re-query CCDS DB by CCDS ID:40884.1Re-query CCDS DB by GeneID:236727See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072451.10 ENSMUSP00000072274.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072451.10Link to Ensembl Protein Viewer:ENSMUSP00000072274.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000072451Re-query CCDS DB by Protein ID:ENSMUSP00000072274
Original member Current member NCBI NM_177353.4 NP_796327.1 Accepted alive Link to Nucleotide Sequence:NM_177353.4Link to Protein Sequence:NP_796327.1Re-query CCDS DB by Nucleotide ID:NM_177353Re-query CCDS DB by Protein ID:NP_796327Link to BLAST:NP_796327.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796327.1 726 Q8BLV3-1 726 100% 0 0

Chromosomal Locations for CCDS 40884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20105963 20106214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20108675 20108780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20120520 20120602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20131771 20131834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20138913 20138972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20158815 20158968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20159632 20159743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20161928 20162041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20162144 20162232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20162434 20162539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20164930 20165071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20166008 20166113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20186060 20186172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20188844 20188920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20202710 20202787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20205366 20205565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20291360 20291684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2181 nt):
ATGGAGCCTAGTGACGCGGCGCGCCCGGGTCCCGGGAGAGCTTTTCGGGGGCTGTCGCCGCGGCTGCTGC
TGCTGCCACTGTTGCCTGTGCTGCTGGGTCGGGGGCTGCGGGCTGGGGCCGCGGCCTCCTCTGGGGCGGC
GGCTGAGGACAGCAGCGCCATGGAGGAGCTTGCCACCGAGAAGGAGGCGGAGGAGAGCCACCGGCAGGAC
AGCGTGAGCCTGCTCACCTTCATCCTGCTGCTCACCCTCACCATCCTCACCATCTGGCTTTTCAAGCACC
GCCGGGTGCGTTTCCTTCATGAGACCGGGCTGGCCATGATTTATGGGCTCATTGTTGGAGTGATCCTGAG
ATATGGCACCCCTGCTACCAGCGGTCATGACAAGTCACTCAGCTGTACTCAGGAAGACAGAGCCTTTAGC
ACTTTATTAGTGAATGTCAGTGGGAAGTTCTTTGAATACACTCTGAAAGGAGAAATCAGCCCTGGCAAGA
TCAACAACGTGGAGCAGAATGACATGCTGCGGAAGGTAACATTTGATCCAGAGGTATTTTTCAACATTCT
GCTGCCTCCAATTATTTTCCATGCTGGATACAGCTTAAAGAAGAGACACTTTTTCAGAAATCTTGGGTCG
ATTCTGGCCTATGCTTTCTTGGGGACTGCTGTTTCTTGCTTCATTATTGGAAATCTTATGTATGGAGTGG
TGAAACTCATGAAGATTGTGGGCCAGCTCTCTGATAAATTTTACTACACAGATTGTCTCTTTTTTGGAGC
AATTATTTCTGCCACTGACCCAGTGACTGTGCTGGCAATCTTTAACGAACTACATGCAGATGTGGATCTT
TATGCTCTTCTGTTTGGAGAGAGTGTCCTGAATGATGCAGTTGCCATTGTACTATCCTCGTCTATTGTTG
CCTATCAACCAGCAGGACTAAACACTCATGCGTTTGATGCTGCTGCCTTTTTTAAGTCAGTTGGCATTTT
CCTAGGTATATTTAGTGGCTCTTTTACCATGGGAGCTGTAACTGGTGTTGTTACTGCTCTAGTGACCAAG
TTTACTAAGCTGCACTGCTTCCCCCTGCTGGAGACAGCGCTTTTTTTCCTGATGTCCTGGAGTACCTTTC
TCCTGGCGGAAGCCTGTGGGTTTACAGGTGTTGTAGCTGTCCTTTTCTGTGGGATTACACAAGCTCATTA
CACATATAACAACCTGTCAGTAGAATCTCGAAGTCGAAGCAAGCAGCTTTTTGAGGTGTTACACTTCCTG
GCAGAGAACTTCATCTTTTCCTACATGGGCCTGGCACTGTTCACCTTCCAGAAACACGTTTTCAGCCCCA
TTTTCATCATCGGTGCTTTTGTTGCCATCTTCCTGGGAAGAGCTGCACATATCTACCCACTCTCCTTCTT
CCTCAACTTGGGCAGAAGGCATAAGATTGGCTGGAATTTTCAACACATGATGATGTTTTCAGGCCTGAGA
GGAGCGATGGCATTTGCACTGGCTATCCGTGACACGGCATCGTATGCCCGCCAGATGATGTTCACAACCA
CACTGCTCATTGTCTTCTTCACTGTGTGGGTCATTGGTGGAGGCACGACACCCATGTTGTCATGGCTCAA
TATAAGAGTTGGTGTGGAGGAGCTCTCTGAAGAGGACCAGAATGAGAACCGATGGCAGTACTTCAGAGTC
GGTGTTGACCCAGATCAAGACCCACCACCTAACAATGACAGCTTTCAAGTCTTACAAGGGGATGGCATGG
ATTCTGTTGGAGGAAGCCGGACAAAGCAGGAAAGTGCATGGATATTCAGGCTGTGGTACATCTTTGATCA
TAATTACTTGAAGCCCATTCTCACCCACAGTGGTCCCCCGCTAACCACCACTCTCCCTGCCTGGTGTGGC
TTGCTAGCTCGATGTCTGACCAGTCCTCAGGTGTATGATAATCAAGAGCCACTGAGAGAAGATGACTCTG
ATTTCATCCTAACGGAAGGTGACCTCACCTTGACCTATGGGGATAGCACCGTGACAGCAAATGGCTCCTC
AAGCTCCTACACAGCCTCCACAAGTCTCGAGTGTGGTCGGAGAACAAAAAGCAGCTCTGAGGAAGTACTT
GAGCGAGACCTGGGAATGGGAGACCAGAAGGTTTCCAGCCGGGGAACCCCCCTCGTGTTTCCACTGCAGG
AAAATGCATGA

Translation (726 aa):
MEPSDAARPGPGRAFRGLSPRLLLLPLLPVLLGRGLRAGAAASSGAAAEDSSAMEELATEKEAEESHRQD
SVSLLTFILLLTLTILTIWLFKHRRVRFLHETGLAMIYGLIVGVILRYGTPATSGHDKSLSCTQEDRAFS
TLLVNVSGKFFEYTLKGEISPGKINNVEQNDMLRKVTFDPEVFFNILLPPIIFHAGYSLKKRHFFRNLGS
ILAYAFLGTAVSCFIIGNLMYGVVKLMKIVGQLSDKFYYTDCLFFGAIISATDPVTVLAIFNELHADVDL
YALLFGESVLNDAVAIVLSSSIVAYQPAGLNTHAFDAAAFFKSVGIFLGIFSGSFTMGAVTGVVTALVTK
FTKLHCFPLLETALFFLMSWSTFLLAEACGFTGVVAVLFCGITQAHYTYNNLSVESRSRSKQLFEVLHFL
AENFIFSYMGLALFTFQKHVFSPIFIIGAFVAIFLGRAAHIYPLSFFLNLGRRHKIGWNFQHMMMFSGLR
GAMAFALAIRDTASYARQMMFTTTLLIVFFTVWVIGGGTTPMLSWLNIRVGVEELSEEDQNENRWQYFRV
GVDPDQDPPPNNDSFQVLQGDGMDSVGGSRTKQESAWIFRLWYIFDHNYLKPILTHSGPPLTTTLPAWCG
LLARCLTSPQVYDNQEPLREDDSDFILTEGDLTLTYGDSTVTANGSSSSYTASTSLECGRRTKSSSEEVL
ERDLGMGDQKVSSRGTPLVFPLQENA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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