NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40883.1 Public Mus musculus X Efhc2 23 108 98 CCDS HistoryNCBI Gene:74405Re-query CCDS DB by CCDS ID:40883.1Re-query CCDS DB by GeneID:74405See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026014.7 ENSMUSP00000026014.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026014.7Link to Ensembl Protein Viewer:ENSMUSP00000026014.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026014Re-query CCDS DB by Protein ID:ENSMUSP00000026014
Original member Current member NCBI NM_028916.5 NP_083192.2 Accepted alive Link to Nucleotide Sequence:NM_028916.5Link to Protein Sequence:NP_083192.2Re-query CCDS DB by Nucleotide ID:NM_028916Re-query CCDS DB by Protein ID:NP_083192Link to BLAST:NP_083192.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083192.2 750 Q9D485 750 100% 0 0

Chromosomal Locations for CCDS 40883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 17132265 17132372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17148272 17148377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17161251 17161343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17162691 17162888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17201046 17201176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17204753 17204949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17207680 17207822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17215658 17215823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17223088 17223226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17223939 17224052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17226338 17226589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17230501 17230724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17243427 17243577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17281478 17281666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17319242 17319283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2253 nt):
ATGGCTCTACCGTTTCTGCCTGGCAACAGCTTTAACCGCAATATAGGAAAGGAGAGGTTCCATAAATCTC
AA
CATTGGGGCTTTTGCAACAATGTCAGGATGCTGGTGAGTGAGAATAAGCCTGGAGTAGGTGGAGATCT
G
CTATATGGCCAAAAGATAAAGCCTAAACACAGTGTATTTCCCAAAGGAGATGGAACCGATGCACCATCC
TGG
GTTGCTTTTGATAAGCAGGTGTTATCTTTTGATGCCTATTTGGAAGATGAAATATCTGATAAAAGAC
AA
GAAATCTTTAGAATAAGATACTACAAAATCTATTTCTACCTTGAAGATGACACCATTCAAGTAAATGA
A
CCAGAAGTGATAAATAGTGGACTGCCTCAAGGCACTTCTATCAGGCGTCAACGGATTCCTTACCCCCCT
CCC
AATGATGATCAGTTTTATACTGTATATGACTTCAATATCAACATAAGTGTTGTCTTCTATGGGCGCA
CA
TTCAAGATTTATGATTGCGATCCATTTACAAAAAACTTTTTGAAGAAAATAGGAATCAAATTGAACCC
T
CCAGGACAATGTCCACTCGATCCCTACATGAAGATGCGGAGAGAGACATTAGAGTTTGTGGATCCCTTT
CGT
CCCTATCAGTCTTTTGACACCCTGAAACGATTCATCCAGTATGATGGGAAGGTTTTGCGTTTCTTCT
GC
TTGTGGGATGATTCAACCTCACTGTTTGGGGACCGTAGAGAATTTGTCCTGCATTACTTCCTGTGTGA
T
GGTACTGTTGAAATCAGGGAAGTACTGCCATCTAATTCAGGCCGGGATGCTATGTCATCATTCCTTCGG
CGG
GGTAAGCTTCCCAAGTATGGCCCACCTGGAATCTACCAACCAGGTCAGATAACAGATCGAGCAGTTC
TC
AATGTGTATGGAGGCTTGTCAGAATGGCGAGCAGATGGCTATCTGCTGGATAAATACCAGCTAGGAAA
A
GTAGAGCAAGACTTTTACACAGACCAGGACCTGTCTATAGGTGCCACCATCAATGTATGGGGAAGAAAA
GTC
CTCCTCTGTGACTGTGATGAGTTTACCAAGACCTATTATAGGACAAAGTATGGAGTTGATAACTTTA
CG
CCCATTTCATGCAAGCCTCCTCATCTTCCAAAGATAGAAAGGAAATACCCACCTTATACTGGCTTTGG
G
TCTGAAGAGGATTCTTTCCGCTCCTGTGTAGGCCTGAAGCCCACACCTCATCGGAAGAACTTCAAAAAA
TTC
ATGGAACTAGACAGCTTTGGAAACATAAGCAATATACTCCGATATTTTGGAAAACTAATTACACACA
AA
TGCGCTGATGTGGACAGGATCTTTGTCATTGCATTTTATCTCAGTGATGACACAATTTCAGTGTTTGA
G
CCTATAGAGAATAATTCAGGGAATGCTGGTGGAATGTTCTTAAAAAGAAGTCGTGTGAAAAAGCCTGGA
CAA
GAAGTTTTTAAAAGTGAATTTTCAGAATACATCAAGGCTGAAGAGCTCTATATTGGAGCCACAGTGA
AT
ATTAATGGCTACCTGTTTATTCTGCTTAATGCTGATGAGTACACCTTAAACTACATGGAGAATAACAC
A
GACAAGTTTCCATATAGCAACTTTGAACTTGCCATACAAAAACTGAAGCAGGAAAAATCAAAATCAAGA
GAG
ATCACACAAGTATTTGCGGCTGCTGACTATAATCACACGAAGGTGGTACCTTACAATACATTCAGAG
AT
ATCCTGATGAGTATCACCATGGGGAAGCTCATAGACCAGGAGCTTATAACCATTGCACGCCACTACCG
T
GTGCCTGAGATTATGGATCCAGACTTAGCATACTTAATTGCCCGGGCCCATGAAAAGTTCAAGAAAAAT
ATA
TTTGAGAATTTTGACATGTTCATTTATAACTGTGTGTATGAAGACAGAGAAAAAAAAGGTGTATTAC
CC
ACCAAAGACATCAGAAGGATGTGCAAGTCTTCCAGGCTACCTCTGGATGATGACTTTCTAGATTGCTT
A
CTGTCCAGGTTTGAAGACAAAGACCATCAAATAAATTATGAGATATTTTTCTCCGTCCTGAACTGGAGA
ATG
AATCCAACACCGGATTTGCAAGCCCCGCCATACCTTAAAGAGAAATGTGAAGACGTTTGGGTGGGAA
TG
CCATCACCTATTCCTGTGAAATACGTTAGATACTTAGACTTTTTGATTGATGTATATGGCTTAGAGGA
C
AACATGCTATGA


Translation (750 aa):
MALPFLPGNSFNRNIGKERFHKSQHWGFCNNVRMLVSENKPGVGGDLLYGQKIKPKHSVFPKGDGTDAPS
W
VAFDKQ
VLSFDAYLEDEISDKRQEIFRIRYYKIYFYLEDDTIQVNEPEVINSGLPQGTSIRRQRIPYPP
P
NDDQFYTVYDFNINISVVFYGRTFKIYDCDPFTKNFLKKIGIKLNPPGQCPLDPYMKMRRE
TLEFVDPF
R
PYQSFDTLKRFIQYDGKVLRFFCLWDDSTSLFGDRREFVLHYFLCDGTVEIREVLPSNSGRDAMSSFLR
R
GKLPK
YGPPGIYQPGQITDRAVLNVYGGLSEWRADGYLLDKYQLGKVEQDFYTDQDLSIGATINVWGRK
V
LLCDCDEFTKTYYRTKYGV
DNFTPISCKPPHLPKIERKYPPYTGFGSEEDSFRSCVGLKPTPHRKNFKK
F
MELD
SFGNISNILRYFGKLITHKCADVDRIFVIAFYLSDDTISVFEPIENNSGNAGGMFLKRSRVKKPG
Q
EVFKSEFSEYIKAEELYIGATVNINGYLFILLNADEYTLNYMENNTDK
FPYSNFELAIQKLKQEKSKSR
E
ITQVFAAADYNHTKVVPYNTF
RDILMSITMGKLIDQELITIARHYRVPEIMDPDLAYLIARAHEKFKKN
I
FENFDMFIYNCVYEDRE
KKGVLPTKDIRRMCKSSRLPLDDDFLDCLLSRFEDKDHQINYEIFFSVLNWR
M
NPTPDLQAPPYLKE
KCEDVWVGMPSPIPVKYVRYLDFLIDVYGLEDNML



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser