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Report for CCDS40743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40743.1 Public Mus musculus 9 Cep63 23 108 98 CCDS HistoryNCBI Gene:28135Re-query CCDS DB by CCDS ID:40743.1Re-query CCDS DB by GeneID:28135See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40743.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093791.9 ENSMUSP00000091306.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093791.9Link to Ensembl Protein Viewer:ENSMUSP00000091306.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093791Re-query CCDS DB by Protein ID:ENSMUSP00000091306
Original member NCBI NM_001081122.1 NP_001074591.1 Updated not alive Link to Nucleotide Sequence:NM_001081122.1Link to Protein Sequence:NP_001074591.1Re-query CCDS DB by Nucleotide ID:NM_001081122Re-query CCDS DB by Protein ID:NP_001074591
Current member NCBI NM_001081122.2 NP_001074591.1 Accepted alive Link to Nucleotide Sequence:NM_001081122.2Link to Protein Sequence:NP_001074591.1Re-query CCDS DB by Nucleotide ID:NM_001081122Re-query CCDS DB by Protein ID:NP_001074591Link to BLAST:NP_001074591.1

Chromosomal Locations for CCDS 40743.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 102586854 102587012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102588708 102588987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102590328 102590533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102594508 102594594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102596122 102596319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102598169 102598283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102601317 102601454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102602418 102602548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102602842 102603075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102607326 102607439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102613295 102613417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102615275 102615370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102618811 102618988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102619692 102619760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102621696 102621728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102623556 102623593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102625904 102625981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2277 nt):
ATGCCGGGTTGCGGCTGCCCGGTCGTCGCGCCCCTGGGTTCCTCCTCCTCCCTATGGGACTCTGGGCTGG
CCGGCCAGACTACAGCAATGAATTGGTGGCCTAGCAACCTCCAAAGATGGAAAAGCCGAAGTTCGAGGAC
ACAGAGCTGTTGCCAAAACAAAGAGGATTTAGAGATGGAGGCTTTGTTGGAAGGAATACAAAATCGGGGG
CATAGTGGGGGATTTTTGACATCCTGTGAAGCAGAACTGCAAGAGCTCATGAAACAGATCGATATAATGG
TGGCTCATAAGAAGTCGGAGTGGGAGGGGCAGACGCACGCTCTGGAGACTTGCTTGGACATCCGTGATCG
GGAGCTGAAGGCTCTGAGGAGTCAGCTGGACATGAAGCACAAAGAGGTTGGAATATTGCATCAGCAGATA
GAAGAACATGAGAAAACCAAGCAAGAAATGGCCATGGAGTACAAGGAGGAGTTACTGAAGCTGCAGGAGG
AATTAAGCAGACTGAAGAGAAGCTATGAAAAGCTGCAGAAAAAGCAACTAAGAGAATTTAGAGGAAATAC
CAAAAGTTTTCGAGAGGATCGGTCTGAGATTGAGAGGCTAACTGGAAAAATAGAGGAATTCCGACAGAAG
TCTCTGGACTGGGAGAAGCAGCGTCTGATTTATCAGCAACAGGTATCTTCTCTGGAAGCACAGAGGAAGG
CTCTGGCTGAACAGTCGGAGATAATCCAGGCTCAGCTTGCCAACCGGAAACAGAAATTAGAGTCCGTGGA
ACTATCTAGCCAGTCAGAAATTCAACACCTGAACAGTAAGCTTGAGCGGGCTAAGGACACCATCTGTGCC
AATGAGCTGGAAATAGAGCGCCTTAACATAAGGGTCAACGACCTGATGGGAACCAATATGACTATCCTGC
AGGACCATCGGCAGAAGGAGGAGAAACTAAGGGAATCTGAGAAGTTACTAGAGGCTCTGCAGGAAGAACA
GAAAGAGTTGAAGGCAAGTCTTCAATCTCAAGAAACCTTCATCCTTGAGGCAAAAATGCAGGAGAAACTG
CAAACGACATTAAAGGCAGTTGGCACTCAGCAGTCCGTAGAAAGGCCTCTGGAGGACTGTCAGAAGGAAA
GGAAGTACAGCTCTCCAGGGCAAGGAGTCTTGGATAATGTGCTCTCCCAGCTGGACTTCAGCCACAGCAG
TGAAGAACTCCTGCAGGCAGAGGTGACGCGTCTTGAAGGCAGTTTAGAATCTGTGAGTGCAACATGCAAA
CAGCTGAGCCAAGAACTAATGGAAAAATACGAAGAGCTGAAGAGGATGGAAGGGCATAACAATGAGTACC
GGACAGAGATAAAGAAGTTGAAGGAACAGATTCTGCAGGCTGATCAGACCTACAGTTCTGCCCTGGAAGG
AATGAAGATGGAAATCTCCCAGCTAACTCGGGAGTTGCACCAGCGAGATATCACTATTGCTTCTGCCAAG
TGTTCCTCCTCAGACATGGAAAAGCAGCTGAAGGCAGAGATGCAGAAGGCAGAAGAAAAGGCTGTAGAGC
ATAAGGAGATTCTAAGTCAGCTGGAATCTCTCAAATTAGAAAATCATCGTCTTTCTGAAACAGTGATGAA
GCTGGAACTGGGCTTGCATGAGGCAAAAGAGATTTCACTAGCAGACCTTCAGGAGAATTATATTGAGGCC
TTAAATAAATTAGTGTCTGAAAATCAACAACTGCAGAAAGATTTGATGAGCACCAAATCTGAGCTGGAGC
ATGCTACTAACATGTGCAAAAAAAAAGATGGCGAGATCTTTAACCCAGCACACAGCAGAGCTGCCGGGTT
CAAGAATGCAGAGCTTAAGCCAATCCATGGCCAGCACAGACATGACGGAATAAAGACCGAGCAGTACAAA
ACAGGTCACCACTCGCCTCGAGGACAAACGTTGGATAGCATAGACCCTGTGGCCAGGGGTCCCAGCCCCC
TGAGTTCTCACATCAGCCCCGGCAGCTCCACCGTCTCTCTGCCTTCCAACTTTCTATTTGAGGCTCACTC
TTTGCCTTCAGTGCTAGATATAAATGATGTCAACTTTTCTGACAGTCTGTCTGACTGTATGAATGACCAA
GAAGAGTTTGTATCTTCGGGCTCGCTGCCCACCTCTCCTCTGGGATCGATAGCTACCAGGTTTCTGGAAG
AGGAGGAGCTGAGGTCTCACCATATTCTAGAGCGCCTGGACGCCCACATTGAAGAACTGAAAAGAGAGAG
TGAGAAGACGGTGAGGCAGTTCACAGCCCTCGTGTAG

Translation (758 aa):
MPGCGCPVVAPLGSSSSLWDSGLAGQTTAMNWWPSNLQRWKSRSSRTQSCCQNKEDLEMEALLEGIQNRG
HSGGFLTSCEAELQELMKQIDIMVAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQI
EEHEKTKQEMAMEYKEELLKLQEELSRLKRSYEKLQKKQLREFRGNTKSFREDRSEIERLTGKIEEFRQK
SLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELSSQSEIQHLNSKLERAKDTICA
NELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEAKMQEKL
QTTLKAVGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCK
QLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSALEGMKMEISQLTRELHQRDITIASAK
CSSSDMEKQLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSETVMKLELGLHEAKEISLADLQENYIEA
LNKLVSENQQLQKDLMSTKSELEHATNMCKKKDGEIFNPAHSRAAGFKNAELKPIHGQHRHDGIKTEQYK
TGHHSPRGQTLDSIDPVARGPSPLSSHISPGSSTVSLPSNFLFEAHSLPSVLDINDVNFSDSLSDCMNDQ
EEFVSSGSLPTSPLGSIATRFLEEEELRSHHILERLDAHIEELKRESEKTVRQFTALV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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