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Report for CCDS40722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40722.1 Public Mus musculus 9 Rasgrf1 23 108 98 CCDS HistoryNCBI Gene:19417Re-query CCDS DB by CCDS ID:40722.1Re-query CCDS DB by GeneID:19417See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40722.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034912.5 ENSMUSP00000034912.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034912.5Link to Ensembl Protein Viewer:ENSMUSP00000034912.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034912Re-query CCDS DB by Protein ID:ENSMUSP00000034912
Original member Current member NCBI NM_011245.2 NP_035375.1 Accepted alive Link to Nucleotide Sequence:NM_011245.2Link to Protein Sequence:NP_035375.1Re-query CCDS DB by Nucleotide ID:NM_011245Re-query CCDS DB by Protein ID:NP_035375Link to BLAST:NP_035375.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035375.1 1262 P27671 1262 100% 0 0

Chromosomal Locations for CCDS 40722.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 89909998 89910273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89924061 89924170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89944726 89944879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89950908 89951003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89953857 89954110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89967851 89967930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89970353 89970546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89970978 89971087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89974765 89974883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89976684 89976844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89980747 89980810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89981601 89981737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89984266 89984348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89991478 89991726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89994671 89995047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89998667 89998789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90000714 90000887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90001805 90001911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90002352 90002464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90004842 90004902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90009273 90009376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90010395 90010479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90012760 90012957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90017036 90017115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90020313 90020430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90021363 90021431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90026671 90026763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3789 nt):
ATGCAGAAAGCCATCCGGCTTAACGATGGCCACGTCGTGACCCTGGGACTGCTGGCACAGAAGGACGGCA
CG
CGCAAAGGCTACCTGAGCAAGAGGAGTGCGGACAACCCAAAATGGCAAACCAAGTGGTTTGCCCTGCT
C
CAGAACCTGCTTTTCTACTTCGAAAGCGACTCCAGCCCTCGGCCCTCGGGGCTCTACCTGCTCGAGGGA
AGT
ATCTGTAAACGCGCGCCCTCCCCCAAGCGAGGGACCTCCTCCAAGGAGTCCGGCGAGAAACAGCAAC
AT
TACTTCACAGTGAACTTCTCCAATGACAGCCAGAAGACCTTGGAGTTGAGGACCGAGGATGCCAAGGA
C
TGTGACGAGTGGGTGGCTGCGATCGCTCGCGCCAGCTACAAGATACTGGCTACAGAACATGAGGCGCTT
ATG
CAGAAGTACTTACACCTGCTGCAGGTAGTGGAGACAGAGAAGACTGTGGCTAAGCAGCTGCGCCAGC
AG
CTTGAGGACGGTGAGGTTGAGATCGAGCGCCTGAAGACGGAGGTAACTATTACAAACCTGATCAAGGA
C
AATGATCGTATCCAATCCAGCAACAAAGCCGGTTCTGCTGATGATGAGGACAGTGACATCAAGAAAATT
AAG
AAGGTTCAGAGCTTCCTTCGGGGATGGCTGTGCCGGCGAAAGTGGAAGAACATCATCCAGGACTACA
TC
CGGTCTCCCCACGCGGACAGCATGCGCAAGAGGAACCAGGTGGTGTTCAGCATGCTGGAGGCCGAGGC
T
GAGTACGTCCAGCAGCTACACATCCTTGTCAACAACTTCCTGCGCCCACTGCGCATGGCCGCCAGCTCT
AAG
AAACCCCCTATAACACACGACGACGTCAGCAGTATCTTTCTGAACAGCGAGACCATCATGTTCCTGC
AT
CAGATCTTCTACCAAGGCCTGAAGGCCCGTATCTCCAGCTGGCCCACCCTGGTGCTGGCGGACCTGTT
C
GATATCCTGCTGCCCATGCTGAACATCTACCAGGAGTTCGTCCGCAACCACCAGTACAGCCTCCAGATC
CTT
GCTCACTGCAAGCAAAACCGGGACTTTGACAAGCTCCTCAAGCAGTACGAGGCCAAGCCAGACTGCG
AG
GAGCGCACACTGGAGACCTTCCTCACCTACCCAATGTTCCAGATCCCCAGGTACATCCTGACACTCCA
T
GAGCTGCTGGCCCACACACCTCATGAGCATGTGGAGCGCAACAGCCTGGACTATGCCAAATCCAAACTA
GAG
GAACTGTCCAGGATCATGCATGACGAAGTCAGTGAAACCGAGAACATCCGCAAAAACCTGGCCATTG
AG
CGTATGATCACGGAGGGCTGTGAGATCCTCCTGGACACCAGCCAGACCTTCGTGCGCCAAGGTTCCCT
C
ATGCAGATGTCCTTGTCTGAAAAGAGCAAGTCCTCTAGGGGCCGCCTGGGGTCTCTGTCCACTAAGAAA
GAG
GGTGAGCGCCAGTGTTTCCTATTCTCCAAGCATCTCATTATCTGCACCAGAGGCTCTGGTGGGAAAC
TG
CACCTAACCAAGAATGGAGTCATATCCCTCATTGACTGCACCTTACTGGATGAACCCGAAAACCTGGA
C
GACGAAGCCAAAGGAGCCGGACCAGAGATAGAACACCTGGAGTTTAAGATCGGGGTGGAGCCAAAGGAC
TCC
CTACCCTTCACTGTCATCCTGGTAGCCTCAACCAGGCAGGAGAAGGCAGCATGGACCAGTGACATCA
TC
CAGTGCGTGGATAATATCCGCTGCAATGGGCTCATGATGAATGCCTTTGAAGAAAATTCCAAGGTCAC
C
GTGCCTCAGATGATCAAGTCTGACGCTTCCTTATATTGTGATGATGTTGACATTCGCTTCAGCAAAACC
ATG
AATTCTTGCAAAGTGCTTCAGATCCGCTATGCCAGCGTGGAGCGCCTGCTGGAGCGCCTGACTGATC
TT
CGCTTCCTGAGCATTGACTTTCTCAACACCTTCCTGCATTCCTATCGCGTCTTCACCAATGCTATGGT
G
GTCCTGGACAAGCTGATCAATATCTACAGAAAACCCATGAGTGCGATTCCTGCCAGGTCCCTGGAACTC
TTG
TTTTCCAGCAGCCACAACGCCAAGCTTCTGTACGGAGATGCCCCTAAGTCCCCTCGCGCCAGCCGCA
AG
TTCTCCTCGCCACCGCCCTTGGCCATCGGGACGTCATCCCCCAGCCGCCGTCGGAAGCTGTCCCTCAA
C
ATCCCCATCATCACAGGCGGCAAGGCGCTGGAACTGGCTTCCCTTGGGTGCAGCTCCGATAGCTACGCC
AAC
ATACACTCACCCATATCTCCCTTCGGCAAAACCACACTGGACACTGGCAAGCTCTGTATGGCCAGCA
GC
TTACCCAAGACTCCAGAGGAGATTGATGTGCCTGCCACGATTCCAGAGAAGCCTGGGGAGCTCTCAGC
C
TCCAGGAAGCATAGCTCTGATGTCCTGAAAGAAGAGTCCGAGGATGACCAGAACCACAGTGATGAAGAC
AAC
ACAGAAGTGTCACCAGTTAAATCCCCACCAACACCAAAATCGTTCTTAAACAGAACCATTACAGAGT
TT
CCATTCTTTAACTACAACAATGGAATCCTGATGACCACGTGTCGTGATCTGGTGGACAATAACCGCAG
C
ACTCTCTCAGCTACTTCTGCCTTTGCCATAGCGACTGCAGGAGCCAATGAAGGCCCCTCAAACAAGGAG
GTG
TTTCGAAGGATGTCTTTGGCCAACACAGGCTTTTCCTCTGACCAGAGAAATATCGACAAGGAGTTTG
TG
ATCCGCAGAGCTGCCACCAATCGTGTGCTGAATGTGCTCCGCCACTGGGTCACCAAGCACACCCAGGA
C
TTTGATACCGACGATACGCTCAAATACAGGGTGATCTGTTTCCTGGAGGAGGTCATGCATGACCCAGAC
CTT
CTGACCCAAGAGCGAAAGGCAGCAGCCAACATCATCAGGACTCTGACCCTAGAAGAAACAACTGAAC
AA
CATAGCATGCTGGAAGAAGTCATACTGATGACGGAGGGTGTGAAGACTGAGCCCTTCGAAAACCACCC
A
GCCCTGGAGATAGCAGAGCAGCTGACCCTGCTGGATCACCTTGTCTTCAAGAGTATTCCTTATGAAGAG
TTC
TTTGGCCAGGGCTGGATGAAGGCCGAGAAGTATGAAAGGACACCTTACATTATGAAAACCACCAAAC
AC
TTCAACCATGTCAGTAACTTCATTGCTTCAGAAATTATCCGAAACGAGGACATCAGCGCAAGGGCAAG
C
GCCATCGAGAAGTGGGTGGCTGTGGCCGACATATGTCGCTGCCTGCACAACTACAATGCTGTGCTGGAG
ATC
ACCTCCTCCATCAACCGCAGCGCCATCTTCCGTCTCAAAAAGACATGGCTCAAAGTTTCTAAGCAGA
CG
AAATCTTTGCTTGACAAGCTCCAAAAGCTTGTGTCATCAGATGGCAGATTTAAGAACCTCAGAGAGTC
T
TTGAGAAATTGTGATCCACCCTGTGTCCCTTACCTGGGGATGTATCTCACCGACTTGGTGTTCATCGAG
GAG
GGGACACCCAATTACACAGAGGACGGCCTGGTCAACTTCTCCAAGATGAGAATGATCTCCCATATTA
TC
CGAGAGATTCGCCAGTTTCAGCAGACTACCTACAAAATCGACCCCCAGCCAAAGGTAATTCAGTACTT
A
CTGGATGAATCTTTCATGTTGGACGAAGAAAGCCTGTATGAGTCTTCGCTCCTAATCGAACCAAAACTC
CCC
ACATGA


Translation (1262 aa):
MQKAIRLNDGHVVTLGLLAQKDGTRKGYLSKRSADNPKWQTKWFALLQNLLFYFESDSSPRPSGLYLLEG
S
ICKRAPSPKRGTSSKESGEKQ
QHYFTVNFSNDSQKTLELRTEDAKDCDEWVAAIARASYKILATEHEAL
M
QKYLHLLQVVETEKTVAKQLRQQLEDGEVEIERLKTEVT
ITNLIKDNDRIQSSNKAGSADDEDSDIKKI
K
K
VQSFLRGWLCRRKWKNIIQDYIRSPHADSMRKRNQVVFSMLEAEAEYVQQLHILVNNFLRPLRMAASS
K
KPPITHDDVSSIFLN
SETIMFLHQIFYQGLKARISSWPTLVLADLFDILLPMLNIYQEFVRNHQYSLQI
L
AHCKQNRDFDKLLKQYEAKPDCEERTLETFLTYPMFQ
IPRYILTLHELLAHTPHEHVERNSLDYAKSKL
E
ELS
RIMHDEVSETENIRKNLAIERMITEGCEILLDTSQTFVRQGSLMQMSLSEKSKSSRGRLGSLSTKK
E
GERQCFLFSKHLIICTRGSGGKLHLTK
NGVISLIDCTLLDEPENLDDEAKGAGPEIEHLEFKIGVEPKD
S
LPFTVILVASTRQEKAAWTSDIIQ
CVDNIRCNGLMMNAFEENSKVTVPQMIKSDASLYCDDVDIRFSKT
M
NSCKVLQIRYASVERLLERLTDLRFLSIDFLNTFLHSYRVFTNAMVVLDKLINIYRKPMSAIPA
RSLEL
L
FSSSHNAKLLYGDAPKSPRASRKFSSPPPLAIGTSSPSRRRKLSLNIPIITGGKALELASLGCSSDSYA
N
IHSPISPFGKTTLDTGKLCMASSLPKTPEEIDVPATIPEKPGELSASRKH
SSDVLKEESEDDQNHSDED
N
TEVSPVKSPPTPKSFLNRTIT
EFPFFNYNNGILMTTCRDLVDNNRSTLSATSAFAIATAGANEGPSNKE
V
FRRMSLANT
GFSSDQRNIDKEFVIRRAATNRVLNVLRHWVTKHTQDFDTDDTLKYRVICFLEEVMHDPD
L
LTQERKAAANII
RTLTLEETTEQHSMLEEVILMTEGVKTEPFENHPALEIAEQLTLLDHLVFKSIPYEE
F
FGQGWMKAEKYERTPYIMKTTKHFNH
VSNFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLE
I
TSSINRSAIFRLKKTWLKVSKQ
TKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIE
E
GTPNYTEDGLVNFSKMRM
ISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEESLYESSLLIEPKL
P
T




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser