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Report for CCDS40686.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40686.1 Public Mus musculus 9 Rfx7 23 108 98 CCDS HistoryNCBI Gene:319758Re-query CCDS DB by CCDS ID:40686.1Re-query CCDS DB by GeneID:319758See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40686.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163401.8 ENSMUSP00000127192.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163401.8Link to Ensembl Protein Viewer:ENSMUSP00000127192.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163401Re-query CCDS DB by Protein ID:ENSMUSP00000127192
Original member Current member NCBI NM_001033536.1 NP_001028708.1 Accepted alive Link to Nucleotide Sequence:NM_001033536.1Link to Protein Sequence:NP_001028708.1Re-query CCDS DB by Nucleotide ID:NM_001033536Re-query CCDS DB by Protein ID:NP_001028708Link to BLAST:NP_001028708.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028708.1 1459 F8VPJ6 1459 100% 0 0

Chromosomal Locations for CCDS 40686.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 72532820 72532980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72577039 72577072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72591751 72591833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72593238 72593360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72607623 72607739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72610304 72610388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72611621 72611828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72615037 72615332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72616637 72619909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4380 nt):
ATGGCAGAGGAACAACAACAGCCGCCACCACAGCAGCTCGATGCCCCTCAGCAGCTTCCCCTCAGCGCCC
CC
AACCCCGGGGTGGCTCTGCCAGCCCTTGTGCCCGGGCTGCCAGGGACAGAGGCCAACGCTCTGCAACA
C
AAGATCAAGAACTCCATCTGCAAAACTGTACAATCTAAAGTGGACTGCATTTTGCAAGAAGTTGAGAAG
TTT
ACAGACCTAGAGAAACTCTACCTCTACCTTCAACTGCCTTCTGGTCTTAGCAGTGCAGAGAAAAGTG
AT
CAGAATGCCATGTCATCTAGTCGGGCACAGCAAATGCATGCCTTTTCCTGGATTCGAAATACCTTAGA
G
GAGCATCCTGAGACGTCACTCCCCAAACAGGAAGTCTATGATGAATACAAGAGCTACTGCGACAATCTT
GGC
TACCATCCATTAAGTGCTGCTGACTTTGGAAAAATCATGAAAAACGTCTTTCCAAACATGAAGGCAC
GC
CGTTTAGGCACTAGAGGCAAATCTAAATATTGCTACAGTGGACTAAGGAAAAAAGCTTTTGTTCATAT
G
CCAACACTGCCCAACCTTGACTTTCATAAAACTGGAGATGGGTTGGAAGGAGTTGAACCATCTGGGCAG
CTT
CAAAATATTGATGAGGAAGTTATCTCTTCTGCTTGCCGTCTTGTGTGTGAGTGGGCCCAGAAAGTGT
TA
AGCCAGCCATTTGACACAGTCTTGGAATTAGCCCACTTCCTTGTAAAGAGTCACTATATAGGCACCAA
G
TCAATGGCAGCTCTGACTGTGATGGCGGCAGCACCGGCAGGACTTAAAGGAATTCCCCAGCCTTCTGCT
TTT
ATACCTACAGCTGAAAGTAATTCCTTTCAACCTCAAGTAAAGACTTTGCCATCTCCAATTGATGCTA
AG
CAGCAGTTGCAACGGAAAATTCAAAAAAAGCAGCAAGAACAGAAACTACAATCTCCATTGCCAGGAGA
A
TCCTCAGCAAAAAAGCCAGAAGGCACTACAGCCAACGGAGTGGCTAATCTACCCAATGGGAACCCTGCG
ATC
CTTTCTCCCCAGCCCATTGGGATCGTGGTGGCAGCTGTCCCTAGCCCCATTCCGGTCCAGCGGACAA
GG
CAGTTAGTAACTTCACCAAGTCCAATGAATTCTCCTGATGGCAAAGTTCTTCCCCTCAATGTGCAAGT
G
GTCACTCAGCACATGCAGTCTGTGAAACAGACACCAAAGACTCCTCAGAACGTTCCAGCCAGTCCTGGT
GGG
GACCGTTCTGCCAGACACCGCTACCCTCAGATCTTACCCAAGCCAGCAAACACCAGTGCGCTCACCA
TC
CGCTCTCCTACAACTGTGCTCTTTACTAGCAGTCCCATCAAAACTGCTGTGGTACCTGCATCACACAT
G
AGTTCTCTAAATGTGGTGAAAATGACAACAATATCCCTCACACCCAGTAACAGTAATGCGCCTCTTAAA
CAT
TCTGCCTCAGTCAGCAGTGCTACTGGAACAACAGAGGAATCAAGGATTGTTCCTCAGATCAAGAATG
GT
TCTGTCGTTTCTCTTCAGTCTCCTGGGTCCAGGGCTAGCAGCACTGGGGGAACTTCGGCTGTGGAAGT
C
AAAATGGAACCAGAAGGTTCATCAGATGAGCATCCTCTCCAGTGCCAAGAGAACTCTGAGGAGACAAAA
GCT
CCCCTGACAACATCTAGTGCCCTTTGGGGCCAGAAAAGTAATACAGATGGAACAGTACCAAAACCTT
CT
AATGAAGGTGTCACTGAAGTGAAAACAACTAAGGTCTGTGACCAGAGGACCAAATGTAAAAATCGATG
T
AATGAAATTCTGTCAGGCATCTCAGCAGGCAATAATCAAAGCACTGTTACTCTCTCGGTTGCTACTCAG
AAC
TTACCTTTCACCAGCACCAGCTCACCATCTAATGGTGACTCAGTAAATAAAGACCCTAAAATATGCA
CT
AAAAGTCCAAGGAAACGACTGTCTGCTACATTGCAAGAGTCTCAGGTGCCTCCTGTAAAGAAACCAAT
T
GTGGAACAGCTTTCTGCAGTTACTATAGAAGGTCAGAAACCAGGCACTGTTAAAAAGGACCAAAAGGTT
CCA
CATTCAGGGAAAACAGAAAGTTCAACAGCAGGTGCTCAGATTCCTAACAAGGTGTCAATCAGTGTCA
GT
TCACAGATAATAGAGGATCAGCCCGTGAACCCTGCTCTTGTCACCAGTGAACCAGTTCTGGAGCAGCA
G
ACAACGCCATCATCGTCTCCGGATGTAAAAGTCAAACTTGAAGGGAGTGTCTTTCTCTTGGACCGTGAG
TCA
AAATCAGATGGCAGCTTTAATCGTAACGAATGGCAACAAGTTACTAAGGATTCTGACTTCATAGCTG
CC
AGCTGTGAGCATCAGCAAGACATTAGTGTTATGACGATTGCTGAGCATCCTGACATCCATGATTTAGA
G
AAATCTGTTTGGGAATTAGAAGGGATGCCACAGGACACATACAGCCAGCAGCTACATAGCCAGATACCA
GAA
TCTTCTCTGAATGAAATACAAGCACAGTCTTCAGATCAGTTGCCATTGCAATCGGAACTGAAAGAGT
TT
GAGTCTTCTGTTTCCCAGACAAATGAAAGCTACTTTCCTTTTGACGATGAACTTACACAAGATAGCAT
T
GTGGAAGAGCTGGTACTTATGGAGCAGCAGATGTCAATGAATAATTCACATTCTTATGGTAACTGCTTG
GGA
ATGAGCCTTCAGAATCAGTCAGTAACTCCAGGAGCTCCAATGTCATCTCATGCTTCCAGCACTCACT
TC
TATCATCCAATTCATAGCAATGGCACTCCAATTCACACACCTACACCCACACCCACTCCTACACCAAC
T
CCAACCCCAACTCCAACCCCAACGTCTGAAATGATTGCTGGGTCTCAGAGTCTGTCACGGGAGAGCCCT
TGT
TCCAGGCTTGCCCAGACAACACCTGTGGATAGTGCTTTAGGAAGTAGCCGACACACACCCATTGGTA
CT
CCTCATTCTAATTGCAGCAGTAGCGTCCCTCCAAGCCCTGTTGAATGCAGGAATCCATTTGCATTCAC
T
CCAATAAGCTCCAGTATGGCATATCACGATGCCAGCATTGTCTCAAGCAGTCCTGTGAAACCAATGCAA
AGA
CCCATGGCCACTCACCCTGATAAAACCAAGCTTGAATGGATGAATAATGGGTATGGTGGGGTTGGTA
AT
TCATCGGTTTCTGGTCATGGCATTCTCCCAAGCTATCAGGAACTAGTAGAAGATCGTTTCAGGAAACC
T
CATGCTTTTGCTGTACCTGGACAGTCATATCAGTCTCAGTCCAGACACCATGACACTCATTTTGGTCGT
TTG
ACTCCCGTCTCTCCTGTGCAGCATCAAGGTGCCACTGTAAACACCAACAAGCAAGAAGGGTTTGCAG
TC
CCAGCTCCTCTTGATAATAAGGGAACTAATTCATCTGCCGGCAGCAACTTCAGGTGCCGGAGTGTGAG
C
CCTGCTGTCCATCGCCAACGGAATCTTAGTGGAAGCACCCTCTATCCTGTGTCTAATATCCCACGGTCT
AAT
GTAACCCCCTTTGGAAGTCCAGTGACCCCAGAAGTTCATGTTTTCACAAATGTTCACACAGATGCAT
GT
GCCAACAACATAGCTCAAAGAAGTCAGTCAGTTCCATTGACAGTCATGATGCAAACAGCCTTCCCAAA
C
GCTCTGCAGAAGCAAACAAACAGTAAAAAAATCACTAATGTTTTGTTGAGTAAACTCGATTCTGACAAT
GAT
GATTCAGTGAGAGGTTTGGGAATTAACAACGTACCCTCCAATTACACAGCCCGGATGAATCTCACCC
AG
ATTTTGGAAACTTCCCCTGTTTTTCCTAGTGCCAACTCACAAAATATGATCGATTCCAGCACTTCTGT
T
TATGAATTCCAAACACCATCTTACCTCACCAAAAGTAATAGCACCGATCAGATCAGTTTTTCTCCTGGA
GAT
AATCAAGCACAATCTGAAATTGGAGAACAGCAGTTAGATTTCAATAGCACTGTTAAAGACCTGTTGA
GT
GGAGACAACCTGCAAACCAGCCAGCAGCTGGTAGGTCAGGTGGCATCTGATCTCACCAACACTGCATC
T
GATTTCTCTAGCGACATCAGGTTGTCTTCTGACCTCTCAGGCAGCATCAATGATTTGAACACCTTAGAC
CCA
AATCTACTGTTTGATCCAGGTCGTCAGCAGGGACAGGATGATGAAGCCACACTGGAAGAATTAAAGA
AT
GACCCACTGTTTCAACAAATTTGCAGTGAGTCAATGAACTCTATGACTTCATCAGGTTTTGAATGGAT
A
GAAAGCAAGGACCATCCTACTGTTGAAATGTTGGGATAA


Translation (1459 aa):
MAEEQQQPPPQQLDAPQQLPLSAPNPGVALPALVPGLPGTEANALQHKIKNSICKTVQSKVDCILQEVEK
F
TDLEKLYLYLQLPSGLSSAEK
SDQNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCDNL
G
YHPLSAADFGKIMKNVFPNMKARRLGTRGKS
KYCYSGLRKKAFVHMPTLPNLDFHKTGDGLEGVEPSGQ
L
QNIDEEVISSACRLVCEWAQKVLSQPFDTVLELAHFLVKSHYIGTKSMAALTVMAAAPA
GLKGIPQPSA
F
IPTAESNSFQPQVKTLPSPIDAKQQLQRKIQKKQQEQKLQSPLPGESSAKKPEGTTANGVANLPNGNPA
I
LSPQPIGIVVAAVPSPIP
VQRTRQLVTSPSPMNSPDGKVLPLNVQVVTQHMQSVKQTPKTPQNVPASPG
G
DRSARHRYPQILPKPANTSALTIRSPTTVLFTSSPIKTAVVPASHMSSLNVVKMTTISLTPSNSNAPLK
H
SASVSSATGTTEESRIVPQIKNGSVVSLQSPGSRASSTGGTSAVEVKMEPEGSSDEHPLQCQENSEETK
A
PLTTSSALWGQKSNTDGTVPKPSNEGVTEVKTTKVCDQRTKCKNRCNEILSGISAGNNQSTVTLSVATQ
N
LPFTSTSSPSNGDSVNKDPKICTKSPRKRLSATLQESQVPPVKKPIVEQLSAVTIEGQKPGTVKKDQKV
P
HSGKTESSTAGAQIPNKVSISVSSQIIEDQPVNPALVTSEPVLEQQTTPSSSPDVKVKLEGSVFLLDRE
S
KSDGSFNRNEWQQVTKDSDFIAASCEHQQDISVMTIAEHPDIHDLEKSVWELEGMPQDTYSQQLHSQIP
E
SSLNEIQAQSSDQLPLQSELKEFESSVSQTNESYFPFDDELTQDSIVEELVLMEQQMSMNNSHSYGNCL
G
MSLQNQSVTPGAPMSSHASSTHFYHPIHSNGTPIHTPTPTPTPTPTPTPTPTPTSEMIAGSQSLSRESP
C
SRLAQTTPVDSALGSSRHTPIGTPHSNCSSSVPPSPVECRNPFAFTPISSSMAYHDASIVSSSPVKPMQ
R
PMATHPDKTKLEWMNNGYGGVGNSSVSGHGILPSYQELVEDRFRKPHAFAVPGQSYQSQSRHHDTHFGR
L
TPVSPVQHQGATVNTNKQEGFAVPAPLDNKGTNSSAGSNFRCRSVSPAVHRQRNLSGSTLYPVSNIPRS
N
VTPFGSPVTPEVHVFTNVHTDACANNIAQRSQSVPLTVMMQTAFPNALQKQTNSKKITNVLLSKLDSDN
D
DSVRGLGINNVPSNYTARMNLTQILETSPVFPSANSQNMIDSSTSVYEFQTPSYLTKSNSTDQISFSPG
D
NQAQSEIGEQQLDFNSTVKDLLSGDNLQTSQQLVGQVASDLTNTASDFSSDIRLSSDLSGSINDLNTLD
P
NLLFDPGRQQGQDDEATLEELKNDPLFQQICSESMNSMTSSGFEWIESKDHPTVEMLG




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser