NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4049.1 Public Homo sapiens 5 THBS4 24 110 108 CCDS HistoryNCBI Gene:7060Re-query CCDS DB by CCDS ID:4049.1Re-query CCDS DB by GeneID:7060See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4049.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350881.6 ENSP00000339730.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000350881.6Link to Ensembl Protein Viewer:ENSP00000339730.2Re-query CCDS DB by Nucleotide ID:ENST00000350881Re-query CCDS DB by Protein ID:ENSP00000339730
Original member Current member NCBI NM_003248.6 NP_003239.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003248.6Link to Protein Sequence:NP_003239.2Re-query CCDS DB by Nucleotide ID:NM_003248Re-query CCDS DB by Protein ID:NP_003239Link to BLAST:NP_003239.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003239.2 961 P35443 961 100% 0 0

Chromosomal Locations for CCDS 4049.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 80035538 80035625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80040077 80040280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80055785 80056032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80058206 80058314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80058708 80058790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80059440 80059491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80059703 80059905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80061695 80061832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80065409 80065477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80067973 80068125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80070306 80070410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80070643 80070750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80071021 80071180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80072278 80072396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80073275 80073327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80076855 80077048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80078049 80078227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80078921 80078969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80079062 80079258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80079905 80080077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80082406 80082545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80083080 80083141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2886 nt):
ATGCTGGCCCCGCGCGGAGCCGCCGTCCTCCTGCTGCACCTGGTCCTGCAGCGGTGGCTAGCGGCAGGCG
CCCAGGCCACCCCCCAGGTCTTTGACCTTCTCCCATCTTCCAGTCAGAGGCTAAACCCAGGCGCTCTGCT
GCCAGTCCTGACAGACCCCGCCCTGAATGATCTCTATGTGATTTCCACCTTCAAGCTGCAGACTAAAAGT
TCAGCCACCATCTTCGGTCTTTACTCTTCAACTGACAACAGTAAATATTTTGAATTTACTGTGATGGGAC
GCTTAAACAAAGCCATCCTCCGTTACCTGAAGAACGATGGGAAGGTGCATTTGGTGGTTTTCAACAACCT
GCAGCTGGCAGACGGAAGGCGGCACAGGATCCTCCTGAGGCTGAGCAATTTGCAGCGAGGGGCCGGCTCC
CTAGAGCTCTACCTGGACTGCATCCAGGTGGATTCCGTTCACAATCTCCCCAGGGCCTTTGCTGGCCCCT
CCCAGAAACCTGAGACCATTGAATTGAGGACTTTCCAGAGGAAGCCACAGGACTTCTTGGAAGAGCTGAA
GCTGGTGGTGAGAGGCTCACTGTTCCAGGTGGCCAGCCTGCAAGACTGCTTCCTGCAGCAGAGTGAGCCA
CTGGCTGCCACAGGCACAGGGGACTTTAACCGGCAGTTCTTGGGTCAAATGACACAATTAAACCAACTCC
TGGGAGAGGTGAAGGACCTTCTGAGACAGCAGGTTAAGGAAACATCATTTTTGCGAAACACCATAGCTGA
ATGCCAGGCTTGCGGTCCTCTCAAGTTTCAGTCTCCGACCCCAAGCACGGTGGTGCCCCCGGCTCCCCCT
GCACCGCCAACACGCCCACCTCGTCGGTGTGACTCCAACCCATGTTTCCGAGGTGTCCAATGTACCGACA
GTAGAGATGGCTTCCAGTGTGGGCCCTGCCCCGAGGGCTACACAGGAAACGGGATCACCTGTATTGATGT
TGATGAGTGCAAATACCATCCCTGCTACCCGGGCGTGCACTGCATAAATTTGTCTCCTGGCTTCAGATGT
GACGCCTGCCCAGTGGGCTTCACAGGGCCCATGGTGCAGGGTGTTGGGATCAGTTTTGCCAAGTCAAACA
AGCAGGTCTGCACTGACATTGATGAGTGTCGAAATGGAGCGTGCGTTCCCAACTCGATCTGCGTTAATAC
TTTGGGATCTTACCGCTGTGGGCCTTGTAAGCCGGGGTATACTGGTGATCAGATAAGGGGATGCAAAGCG
GAAAGAAACTGCAGAAACCCAGAGCTGAACCCTTGCAGTGTGAATGCCCAGTGCATTGAAGAGAGGCAGG
GGGATGTGACATGTGTGTGTGGAGTCGGTTGGGCTGGAGATGGCTATATCTGTGGAAAGGATGTGGACAT
CGACAGTTACCCCGACGAAGAACTGCCATGCTCTGCCAGGAACTGTAAAAAGGACAACTGCAAATATGTG
CCAAATTCTGGCCAAGAAGATGCAGACAGAGATGGCATTGGCGACGCTTGTGACGAGGATGCTGACGGAG
ATGGGATCCTGAATGAGCAGGATAACTGTGTCCTGATTCATAATGTGGACCAAAGGAACAGCGATAAAGA
TATCTTTGGGGATGCCTGTGATAACTGCCTGAGTGTCTTAAATAACGACCAGAAAGACACCGATGGGGAT
GGAAGAGGAGATGCCTGTGATGATGACATGGATGGAGATGGAATAAAAAACATTCTGGACAACTGCCCAA
AATTTCCCAATCGTGACCAACGGGACAAGGATGGTGATGGTGTGGGGGATGCCTGTGACAGTTGTCCTGA
TGTCAGCAACCCTAACCAGTCTGATGTGGATAATGATCTGGTTGGGGACTCCTGTGACACCAATCAGGAC
AGTGATGGAGATGGGCACCAGGACAGCACAGACAACTGCCCCACCGTCATTAACAGTGCCCAGCTGGACA
CCGATAAGGATGGAATTGGTGACGAGTGTGATGATGATGATGACAATGATGGTATCCCAGACCTGGTGCC
CCCTGGACCAGACAACTGCCGGCTGGTCCCCAACCCAGCCCAGGAGGATAGCAACAGCGACGGAGTGGGA
GACATCTGTGAGTCTGACTTTGACCAGGACCAGGTCATCGATCGGATCGACGTCTGCCCAGAGAACGCAG
AGGTCACCCTGACCGACTTCAGGGCTTACCAGACCGTGGTCCTGGATCCTGAAGGGGATGCCCAGATCGA
TCCCAACTGGGTGGTCCTGAACCAGGGCATGGAGATTGTACAGACCATGAACAGTGATCCTGGCCTGGCA
GTGGGGTACACAGCTTTTAATGGAGTTGACTTCGAAGGGACCTTCCATGTGAATACCCAGACAGATGATG
ACTATGCAGGCTTTATCTTTGGCTACCAAGATAGCTCCAGCTTCTACGTGGTCATGTGGAAGCAGACGGA
GCAGACATATTGGCAAGCCACCCCATTCCGAGCAGTTGCAGAACCTGGCATTCAGCTCAAGGCTGTGAAG
TCTAAGACAGGTCCAGGGGAGCATCTCCGGAACTCCCTGTGGCACACGGGGGACACCAGTGACCAGGTCA
GGCTGCTGTGGAAGGACTCCAGGAATGTGGGCTGGAAGGACAAGGTGTCCTACCGCTGGTTCCTACAGCA
CAGGCCCCAGGTGGGCTACATCAGGGTACGATTTTATGAAGGCTCTGAGTTGGTGGCTGACTCTGGCGTC
ACCATAGACACCACAATGCGTGGAGGCCGACTTGGCGTTTTCTGCTTCTCTCAAGAAAACATCATCTGGT
CCAACCTCAAGTATCGCTGCAATGACACCATCCCTGAGGACTTCCAAGAGTTTCAAACCCAGAATTTCGA
CCGCTTCGATAATTAA

Translation (961 aa):
MLAPRGAAVLLLHLVLQRWLAAGAQATPQVFDLLPSSSQRLNPGALLPVLTDPALNDLYVISTFKLQTKS
SATIFGLYSSTDNSKYFEFTVMGRLNKAILRYLKNDGKVHLVVFNNLQLADGRRHRILLRLSNLQRGAGS
LELYLDCIQVDSVHNLPRAFAGPSQKPETIELRTFQRKPQDFLEELKLVVRGSLFQVASLQDCFLQQSEP
LAATGTGDFNRQFLGQMTQLNQLLGEVKDLLRQQVKETSFLRNTIAECQACGPLKFQSPTPSTVVPPAPP
APPTRPPRRCDSNPCFRGVQCTDSRDGFQCGPCPEGYTGNGITCIDVDECKYHPCYPGVHCINLSPGFRC
DACPVGFTGPMVQGVGISFAKSNKQVCTDIDECRNGACVPNSICVNTLGSYRCGPCKPGYTGDQIRGCKA
ERNCRNPELNPCSVNAQCIEERQGDVTCVCGVGWAGDGYICGKDVDIDSYPDEELPCSARNCKKDNCKYV
PNSGQEDADRDGIGDACDEDADGDGILNEQDNCVLIHNVDQRNSDKDIFGDACDNCLSVLNNDQKDTDGD
GRGDACDDDMDGDGIKNILDNCPKFPNRDQRDKDGDGVGDACDSCPDVSNPNQSDVDNDLVGDSCDTNQD
SDGDGHQDSTDNCPTVINSAQLDTDKDGIGDECDDDDDNDGIPDLVPPGPDNCRLVPNPAQEDSNSDGVG
DICESDFDQDQVIDRIDVCPENAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLA
VGYTAFNGVDFEGTFHVNTQTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVK
SKTGPGEHLRNSLWHTGDTSDQVRLLWKDSRNVGWKDKVSYRWFLQHRPQVGYIRVRFYEGSELVADSGV
TIDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDFQEFQTQNFDRFDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH