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Report for CCDS40321.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40321.2 Public Mus musculus 8 Lonrf1 23 108 98 CCDS HistoryNCBI Gene:244421Re-query CCDS DB by CCDS ID:40321.2Re-query CCDS DB by GeneID:244421See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40321.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000239119.1 ENSMUSP00000158932.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239119.1Link to Ensembl Protein Viewer:ENSMUSP00000158932.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239119Re-query CCDS DB by Protein ID:ENSMUSP00000158932
Original member Current member NCBI NM_001081150.2 NP_001074619.2 Accepted alive Link to Nucleotide Sequence:NM_001081150.2Link to Protein Sequence:NP_001074619.2Re-query CCDS DB by Nucleotide ID:NM_001081150Re-query CCDS DB by Protein ID:NP_001074619Link to BLAST:NP_001074619.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074619.2 762 D3YY23 762 100% 0 0

Chromosomal Locations for CCDS 40321.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 36217443 36217601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36219826 36219978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36222616 36222778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36222864 36223022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36225557 36225678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36229136 36229250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36230081 36230177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36230283 36230523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36231038 36231187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36233900 36234022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36235989 36236107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36248567 36249254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2289 nt):
ATGTCTTCTCCGGCCGTGGCGAGGGCGTCCCCGGGCGGGAATCGGGAGGCGTCCGGCGGACCGCGGAGCC
GGAACGGGCCGTGGGAAGTGGGCGGCGGCGGCGAGCGGTTGGAGCGCGCGGGCGCGGAGTCGGGGCGCTG
GGAGCTTCTGCTCCGCCGCGGAGAGCTGCTGGCGCTGGGCGGCCACCTGAAGGGAGCGCTGGAGGCGTTC
GCGGCTGCGCTGCGCCGCGGGGCCCCGGCCAGGCCCGAGCGCCTCGGGTCGCTAGTGGACTGCCTGGTGT
TCAGCTACCGGCTCCGCCACGGGCTGCGCTGGAGCGCGGCACCCGCGGCGGGCGCGGCCGGGCTGCTCAG
CTGCCTGAGCTGCCGGGGCTTCCTAAGCGAGCCGGTGACCGTGCCGTGCGGCCACAGCTACTGCCGCCGT
TGCCTACGGAGGGAGCTGCGCGCCCGCTGCCGCCTGTGCCGGGACCGCCTGCCACCCGCCGCCGCCGCCT
CGGAGGGGACCCCGCGGCCGCCGCCCCTGGCCGCCGCCATCGCCGACTTCCGAACCAGCGTCGTGCTCAA
CCACCTGGCGGAGAAGTGGTTCCCGGGCCAGCGCGAGCGCGCGCGGGCGGCCGGCCGCCTCGGGGAACTG
CTGCACGAAGGGCGCTACCGGGAGGCCCTGGCCGCCGCCTGCGACGCCCTGCGAGCAGAGCCCAGCGACC
TGACTCTCAAAATCTACAGAGCGGAGTCGTACGCCGGCCTGCAGGAGTTTAAGGCGGCCCTAGAGGATCT
GAACGCAGTTCTCTTTCAGCTTCCCAACTGGCCCGAGGTCTACTTCAGGAAAGGGAAGGTCCTCCAGGAT
GCCGGCTTTCTAGGCGATGCCTTACAGCTCTTTCTTCAGTGCTTAGCCCTCGATGAAGACTTCGCGCCCG
CAAAGCTACAAGTAGAAAAGATTCTGTGTGACTTACTGTCACCTGAAAATGTAAGGGAAGGCCTGAAGGA
GTCTTCCTGGAGTTCGTTACCGTGCATTAAGAGCAAACCTCTTGGTTTTCCATCAGTAATGGAGCAGCCA
CACTCCCCTGCTGAGCTTGGCCTGAAGCAGCCTGAAGAACGAGTGGAGGATGCCCCAGAGCCTGTCAAAG
GAAGCTTAAGCCGCGCCCAGTCAGCACAAGCCATCAGTGCAGCGGCAGTGCCTGCCAGGGAGGACGGTTT
AAAGCGCGTGTGCTCAGAACCCTTACTGTCCGCCCAGGGAAAGGGGGTCCTGCTCAAACGAAAGCTGTCT
CTCTTAGAACAGGACGTGCTTATTAACGAAGACGGGAGGAGTAAGCTCAAAAAGCAAAGCGAATCTCCCA
GTGAAGACTGTATGTTTTCAATAGCTTATGGCGACATCCCAGAAGAACTAATCGACGTCTCAGACTTTGA
GTGTTCTCTCTGTATGAGGTTGTTTTTTGAGCCAGTAACAACCCCTTGTGGACACTCATTCTGTAAGAAT
TGTCTTGAGCGTTGTTTAGATCATGCGCCATATTGTCCCCTCTGCAAAGAAAGCTTAAAAGAGTATCTAG
CAGACAGGAGGTACTGTGTCACCCAGCTGCTGGAGGAGTTAATAGTGAAATACCTGCCAGATGAGCTGTC
CGAGAGGAAGAAAATCTATGATGAAGAAACTGCTGAGCTCTCACACTTGACCAAGAATGTCCCAATATTC
GTTTGCACTATGGCCTACCCCACTGTGCCTTGCCCACTCCATGTGTTCGAGCCCAGATACAGGCTCATGA
TCCGAAGGAGTATCCAAACTGGAACCAAGCAGTTCGGGATGTGCGTCAGTGATACACAAAACAGTTTTGC
AGATTATGGTTGTATGCTACAAATCCGAAACGTGCATTTCTTACCTGACGGAAGGTCTGTTGTTGACACA
GTTGGAGGGAAGCGGTTCAGAGTTCTAAAAAGAGGAATGAAAGATGGATATTGCACTGCAGACATTGAGT
ATCTAGAAGATGTTAAGATTGAGAATGGAGATGAAATAAGGAGCCTGCGAGAGCTCCATGACTCGGTGTA
CTCGCAAGCCTGCAGCTGGTTTCAGAATTTAAGGGACAGATTTCGAAGCCAAATCCTTCAGCACTTTGGA
TCAATGCCTGAGAGAGAAGAAAACCTCCAGGCAACACCCAATGGACCTGCATGGTGTTGGTGGCTGCTGG
CAGTCCTCCCTGTCGACCCGAGATATCAGCTCTCCGTACTGTCCATGAAGTCTTTGGAGGAACGGTTGAC
GAAGATACAGCATATTCTGACATACTTTTCTAGAGACCAGTCTAAGTAA

Translation (762 aa):
MSSPAVARASPGGNREASGGPRSRNGPWEVGGGGERLERAGAESGRWELLLRRGELLALGGHLKGALEAF
AAALRRGAPARPERLGSLVDCLVFSYRLRHGLRWSAAPAAGAAGLLSCLSCRGFLSEPVTVPCGHSYCRR
CLRRELRARCRLCRDRLPPAAAASEGTPRPPPLAAAIADFRTSVVLNHLAEKWFPGQRERARAAGRLGEL
LHEGRYREALAAACDALRAEPSDLTLKIYRAESYAGLQEFKAALEDLNAVLFQLPNWPEVYFRKGKVLQD
AGFLGDALQLFLQCLALDEDFAPAKLQVEKILCDLLSPENVREGLKESSWSSLPCIKSKPLGFPSVMEQP
HSPAELGLKQPEERVEDAPEPVKGSLSRAQSAQAISAAAVPAREDGLKRVCSEPLLSAQGKGVLLKRKLS
LLEQDVLINEDGRSKLKKQSESPSEDCMFSIAYGDIPEELIDVSDFECSLCMRLFFEPVTTPCGHSFCKN
CLERCLDHAPYCPLCKESLKEYLADRRYCVTQLLEELIVKYLPDELSERKKIYDEETAELSHLTKNVPIF
VCTMAYPTVPCPLHVFEPRYRLMIRRSIQTGTKQFGMCVSDTQNSFADYGCMLQIRNVHFLPDGRSVVDT
VGGKRFRVLKRGMKDGYCTADIEYLEDVKIENGDEIRSLRELHDSVYSQACSWFQNLRDRFRSQILQHFG
SMPEREENLQATPNGPAWCWWLLAVLPVDPRYQLSVLSMKSLEERLTKIQHILTYFSRDQSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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