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Report for CCDS40278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40278.1 Public Mus musculus 8 Defa26 23 108 98 CCDS HistoryNCBI Gene:626708Re-query CCDS DB by CCDS ID:40278.1Re-query CCDS DB by GeneID:626708See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40278.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074343.5 ENSMUSP00000073950.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074343.5Link to Ensembl Protein Viewer:ENSMUSP00000073950.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000074343Re-query CCDS DB by Protein ID:ENSMUSP00000073950
Original member Current member NCBI NM_001079933.2 NP_001073402.1 Accepted alive Link to Nucleotide Sequence:NM_001079933.2Link to Protein Sequence:NP_001073402.1Re-query CCDS DB by Nucleotide ID:NM_001079933Re-query CCDS DB by Protein ID:NP_001073402Link to BLAST:NP_001073402.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073402.1 93 Q3L180 93 100% 0 0

Chromosomal Locations for CCDS 40278.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 21618183 21618354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21618773 21618882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (282 nt):
ATGAAGACACTTGTCCTCCTCTCTGCCCTTTTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAA
ACACAGATGAAGAGACTAATACTGAGGTGCAGCCACAGGAAGAGGACCAGGCTGTGTCTGTCTCCTTTGG
AAATCCAGAAGGCTCTGATCTTCAAGAAGAATCGTTGAGAGATCTGGGATGCTATTGTAGAAAAAGAGGC
TGTACAAGAAGAGAACGCATTAATGGGACCTGCAGAAAGGGTCATTTAATGTACACACTCTGCTGCCTCT
GA

Translation (93 aa):
MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRG
CTRRERINGTCRKGHLMYTLCCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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