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Report for CCDS40119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40119.1 Public Mus musculus 7 Zkscan2 23 108 98 CCDS HistoryNCBI Gene:210162Re-query CCDS DB by CCDS ID:40119.1Re-query CCDS DB by GeneID:210162See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042470.13 ENSMUSP00000041821.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042470.13Link to Ensembl Protein Viewer:ENSMUSP00000041821.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042470Re-query CCDS DB by Protein ID:ENSMUSP00000041821
Original member Current member NCBI NM_001081329.2 NP_001074798.1 Accepted alive Link to Nucleotide Sequence:NM_001081329.2Link to Protein Sequence:NP_001074798.1Re-query CCDS DB by Nucleotide ID:NM_001081329Re-query CCDS DB by Protein ID:NP_001074798Link to BLAST:NP_001074798.1

Chromosomal Locations for CCDS 40119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 123479850 123480772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123484940 123485431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123489579 123490262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123494806 123494932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123495293 123495363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123498586 123498772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123499569 123499967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2883 nt):
ATGGCTACTGTCATGAACCCTCAGATCGACGTGGAAGTTGAGGAGTGCCTCATAATGAAAGTGGAAAAGG
ACTCCGAGTGGGTATCGGAGCCCATTCTGGAAAGATCAGGCAGCACTGAATGTGAGTCCTTCCGTAAATG
CTTCAGGCAGTTCTGTTATGAGGATGTGACAGGACCCCATGAAGCTTTCAGTAAACTCTGGGAACTCTGC
TGTCGGTGGCTGAAGCCAGAAATGCGTTCCAAGGAACAGATCCTCGAGCAGCTGGTAATCGAACAGTTTC
TCACCATTCTGCCTGAGAAGATTCAGACCTGGGCGCAGAAGCAATGTCCAGAAAGCGGAGAGGAGGCGGT
GGCCCTAGTAGTGCATTTGGAGAAAGAGACCAGAAGACTTCGAAAGCAGGTCAGTAGCCCTCTGCCTTCA
GAGAAGCAAGCCCCACCTAGAACTGTGTGGGAAGTAGCTGACTTTGAGCCAGAGCAACTGGAGACCCAGC
ACAGGGTTGTTTCTCTGGAGGAAGCTGGAAGCCTCCACTCAGGACACCAAGAACAGCTGAACCAAAAAAG
GGAACATAGGCCATTACCTAAGAATGCTCACTCTTCTGTCTGGGTTCCTGTCCCTAGTGATGAGTGGAAT
GCTCTCGATGAGGAAGTGACAACCCAGGAACCAATAAGAGATGTCCACACAGAGAGAAGCTTTTCCTACA
AAAAAAGTGTACAGCAAGTTCCGGCGCACAGAGGTCTCTACCACGAAATCAGGAAGGAAAGTGCAGGGAG
CATGGTTTCCCTGGGAGACTCTGTGTCTGCACCTAACAAAATAGCCCAGTTGGAACAAAAAAAGGAACCA
TGGAGCGTAGGTCTTCATTCCTCAAACAAGAGGAATAGTGTCCTGCAAAGCAACTACATCAAAGAGAAGT
CGGTCCATGCTGTTCAGATCCCAGCTAGGAATGCAGGGAAAGTGTGGCGAGAGCAGCAACAGTGGGGTTT
GGAAGATGAAAAGATTGCAGGTGTGCACTGGAGCTATGAAGAAACCAAGACTTTTCTTGCAATTCTCAAG
GAATCTCGCTTTTATGAAACACTCCAGGCTTGTCCCCGAAATAGCCAGGTATATGGTGCTGTGGCTGAAT
GGTTGCGAGAATGTGGCTTCCTCCGAACACCAGAGCAGTGCCGGACCAAGTTCAAAAGTCTTCAGAAGAG
TTATCGAAAAGTGAGAAATGGCCACATGCTAGAACCCTGTGCCTTCTTTGAGGACATGGATGCCTTGTTA
AACCCTGCAGCCCACACTTCATCTACTGAGAGGCCAAAGGTTGTGATCTCTCTCCCACTAAAGAGAACTG
CTATTAGTGCTAAAGAGCAGGTCAGTTTGGTGGAGGAGGAGGAAGGTGCTGAAGACTCCGATGGTGATGA
AGTGGGCATTGAGTTTATACGCAAGTCTGAAATCCGTGCTGCCCCTGTCTTATTTCAAAACCTAAGTGGT
GTGCATTGGGGCTATGAAGAAACCAAGACTTTTCTTGATATCCTTCAAGAGACCCGATTTTATGAAGCAC
TTCAAGCCTGCCATCGGAAGAGCAAATTGTATGGAGTCGTGGCTGAACAACTTCGAGAATGTGGCTTTCT
CCGGACACCAGAGCAATGCCGAACCAAGTTCAAAAGCCTTCAGAAGAGTTACCGAAAAGTGAAGAATGGC
CATGTACTGGAGTCCTGTGCATTTTACAAGGAGATGGATGCCCTGGTTAACTGCCGTCCATCCTCCCTTT
CCACCAACACCTCAGAAGAAGTCCCATCCCTCTCAAGGCAGGAAAGGGGACATATTGAGGTTGAACCCCG
AGAGCCTACAACCTGGGAACCTGTGGAGACCCCACAGGAAGCAGTGTTAGAAGATTCTGGCAGTGAGAGA
CTGAGTGAGGAGGAAATGATAGAAGAGCCAGAACTTGAAGGACCTTCAGGCCTGCTGCAAAGCCCAGCTG
GTTTTGAAATTGGAACTATTATTAAGGAAGACCCAACACAGGTAATGTTTAAGGACACAGAGCCCCATAG
GGTATTAATGGAAAAACCTAAAAGACTTGTTTCCCAGAATACTAACCCCAGTAAATACTGTAAAAGGGAG
TACTTCTCAGGAAGACACTGTGAAAACCTTCAAGGAGTTAGACAGGGAAAGCTGATGTCTCAACCTAGAG
ATACAGGGAAGGCTGTGGTGCATCAGAGGCCTTGTGTGGGGAGGAGACCATATAGACTTCTCAAATATGG
GGAAAACTTTGGAAGGAGTGCCCGTCTTGTGTGCAGGATGACCCACCAGAAGGAGAATCCTTTTAAGTGT
GGTGTCTGTGGGAAGTGCTTTGGTAGGAGCAGGAGCCTTATCAGACACCAAAGAATCCACACTGGGGAAA
AGCCTTTCAAATGTCCTGACTGTGGGAAAAGCTTTAATGACTCCTCAAATTTTGGAGCCCACCAGAGAGT
CCATACTGGAGAGAAGCCGTACAGATGCAGGGAGTGTGGGAAATGCTTCAGCCAGAGCTCAAGTCTTATC
ATCCATCAGAGAACCCACACTGGTGAGAAGCCCTATCAGTGTGAAGAGTGTGGGAAAAGCTTCACCAACA
GTTCTCACTTCAGTGCCCACCGCAGAATCCATACTGAAGAGAATCCCTACAAATGTGGGGACTGTGAGAA
GAGCTTCAATAACTGCGCAAGGTTCCGAGAACACCAGCGAATCCACAATGGAGAGAAGCCCTACACATGT
GCCCAGTGTGGCAAACATTTCAATAAGAGCTCTTTCCTCACTAAACACCGGGAAGTCCACATGAGAGAAA
AGCTGCTGCCATACTCCCCCTCTGTGTACTCCCCAGAGAACCTACTGAAAGGCAAGAGTGCCGAGCTCAG
GAAGACCTTTTGA

Translation (960 aa):
MATVMNPQIDVEVEECLIMKVEKDSEWVSEPILERSGSTECESFRKCFRQFCYEDVTGPHEAFSKLWELC
CRWLKPEMRSKEQILEQLVIEQFLTILPEKIQTWAQKQCPESGEEAVALVVHLEKETRRLRKQVSSPLPS
EKQAPPRTVWEVADFEPEQLETQHRVVSLEEAGSLHSGHQEQLNQKREHRPLPKNAHSSVWVPVPSDEWN
ALDEEVTTQEPIRDVHTERSFSYKKSVQQVPAHRGLYHEIRKESAGSMVSLGDSVSAPNKIAQLEQKKEP
WSVGLHSSNKRNSVLQSNYIKEKSVHAVQIPARNAGKVWREQQQWGLEDEKIAGVHWSYEETKTFLAILK
ESRFYETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHMLEPCAFFEDMDALL
NPAAHTSSTERPKVVISLPLKRTAISAKEQVSLVEEEEGAEDSDGDEVGIEFIRKSEIRAAPVLFQNLSG
VHWGYEETKTFLDILQETRFYEALQACHRKSKLYGVVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNG
HVLESCAFYKEMDALVNCRPSSLSTNTSEEVPSLSRQERGHIEVEPREPTTWEPVETPQEAVLEDSGSER
LSEEEMIEEPELEGPSGLLQSPAGFEIGTIIKEDPTQVMFKDTEPHRVLMEKPKRLVSQNTNPSKYCKRE
YFSGRHCENLQGVRQGKLMSQPRDTGKAVVHQRPCVGRRPYRLLKYGENFGRSARLVCRMTHQKENPFKC
GVCGKCFGRSRSLIRHQRIHTGEKPFKCPDCGKSFNDSSNFGAHQRVHTGEKPYRCRECGKCFSQSSSLI
IHQRTHTGEKPYQCEECGKSFTNSSHFSAHRRIHTEENPYKCGDCEKSFNNCARFREHQRIHNGEKPYTC
AQCGKHFNKSSFLTKHREVHMREKLLPYSPSVYSPENLLKGKSAELRKTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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