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Report for CCDS39847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39847.1 Public Mus musculus 7 Coq8b 23 108 98 CCDS HistoryNCBI Gene:76889Re-query CCDS DB by CCDS ID:39847.1Re-query CCDS DB by GeneID:76889See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003860.12 ENSMUSP00000003860.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003860.12Link to Ensembl Protein Viewer:ENSMUSP00000003860.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000003860Re-query CCDS DB by Protein ID:ENSMUSP00000003860
Original member Current member EBI ENSMUST00000108378.9 ENSMUSP00000104015.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108378.9Link to Ensembl Protein Viewer:ENSMUSP00000104015.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108378Re-query CCDS DB by Protein ID:ENSMUSP00000104015
Original member Current member NCBI NM_133770.2 NP_598531.2 Accepted alive Link to Nucleotide Sequence:NM_133770.2Link to Protein Sequence:NP_598531.2Re-query CCDS DB by Nucleotide ID:NM_133770Re-query CCDS DB by Protein ID:NP_598531Link to BLAST:NP_598531.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598531.2 533 Q566J8 533 99.8124% 0 1

Chromosomal Locations for CCDS 39847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27233468 27233572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27233702 27233821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27233941 27234007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27237378 27237455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27239797 27239919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27240040 27240125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27241979 27242119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27242212 27242293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27243303 27243396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27250287 27250428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27250536 27250643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27252261 27252326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27256612 27256698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27257223 27257525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGTGGCTGGAGCTAGGTGCCATGCTGCGCAGGACCTGTGGACCGCTGGGCAGGGCTGTTCGTCTGCCCT
GT
GGGGGGGCCCTAGGACCTAGGCCCCACTGGTGGGGGCCATGTAGGAGTTGCTTGGCCCAAAGTGTTCA
T
CAAGACCAGCCTGGAAGAGGCCTCAGTGAAGATGACATTCGCAGGGCACGGGAGGCCCGGCTCAGGAAG
GCA
CCCCGGCCCCAGCTGAGTGATCGCTCTCGTGAACGCAAGGTGCCTGCCTCCCGCATCAGTCGCTTGG
CC
AGCTTTGGGGGGCTGGCTGTGGGCTTGGGCCTGGGAGCGCTGGCTGAGGTGACTAAGAAGTCCTTGCC
A
GGTGGAAGTCTGCAGCATGAGGGCGTCTCTGGATTGGGCTCCAGTCCTTTCCTCTCCGAGGCCAATGCT
GAG
AGGATCGTGCAGACCTTATGTACAGTCCGGGGGGCTGCCCTCAAGATCGGCCAAATGCTCAGTATCC
AG
GACAACAGCTTTATCAGCCCCCAGCTTCAGCGAATCTTTGAGAGGGTCCGACAGAGTGCCGACTTTAT
G
CCCCGCTGGCAAATGATGAGAGTTCTAGAAGAGGAGCTAGGCAAGGACTGGCAAGACAAGGTGGCCTCC
CTC
GAGGAAGTGCCCTTTGCTGCTGCCTCCATTGGGCAGGTACACCAAGGCTTGCTAAAGGATGGGACTG
AG
GTGGCTGTGAAGATCCAGTACCCAGGTGTTGCCCAGAGCATCCAGAGTGACGTGGAGAACCTGCTGGC
C
CTGCTCAAGATGAGTGTGGGCCTGCCAGAGGGCCTGTTTGCTGAGCAGAGCCTGCAGACCTTGCAGCAG
GAG
CTGGCTTGGGAATGTGACTACTGCAGAGAAGCGGCCTGTGCCCAGACCTTCAGGAAGCTCTTAGCTG
AC
GACCCCTTCTTCCGAGTGCCAGCTGTGGTGCAGGAGCTATGCACTACACGGGTGCTGGGCATGGAGCT
G
GCTGGGGGAATCCCTCTAGACCAGTGCCAGGGCCTGAGCCAAGACATCCGGAATCAGATCTGCTTTCAG
CTC
CTGAGGTTGTGTCTGCGGGAACTGTTTGAGTTCAGATTCATGCAGACTGATCCCAACTGGGCCAACT
TC
CTGTATGATGCCTCCAGCCACCAGGTGACTCTACTGGATTTTGGTGCAAGCCGGGCGTTTGGGACAGA
G
TTCACGGACCATTACATTGAGGTGGTGAAGGCTGCAGCAGATGGAGACAGAGATCGAGTTCTACAGAAA
TCC
CAGGACCTCAAGTTCCTTACAGGCTTTGAAACCAAGGCATTCTCTGACGCCCACGTCGAGGCAGTGA
TG
ATCCTGGGGGAGCCCTTTGCTGCCTCAGGCCCCTACGACTTTGGGGCTGGAGAGACTGCTCGCCGAAT
A
CAGGGCCTCATCCCGGTATTGCTTCGGCACCGGCTGCGCCCACCGCCTGAGGAGACCTATGCTCTACAC
CGC
AAGCTAGCTGGGGCTTTCTTAGCCTGTGCCCGTCTCCACGCCCACATCGCCTGCCGGGACCTCTTCC
AA
GATACCTACCACCGCTACTGGGCCAGTCGCCAGACACTGCCGCTGCCAGCAGCCTCCTGA


Translation (533 aa):
MWLELGAMLRRTCGPLGRAVRLPCGGALGPRPHWWGPCRSCLAQSVHQDQPGRGLSEDDIRRAREARLRK
A
PRPQ
LSDRSRERKVPASRISRLASFGGLAVGLGLGALAEVTKKSLPGGSLQHEGVSGLGSSPFLSEANA
E
RIVQTLCTVRGAALKIGQMLSIQ
DNSFISPQLQRIFERVRQSADFMPRWQMMRVLEEELGKDWQDKVAS
L
EEVPFAAASIGQVHQGLLKDGTEVAVKIQ
YPGVAQSIQSDVENLLALLKMSVGLPEGLFAEQSLQTLQQ
E
LAWECDYCREAACAQTF
RKLLADDPFFRVPAVVQELCTTRVLGMELAGGIPLDQCQGLSQDIRNQICFQ
L
LRLCLRELFEFRFMQTDPNWANFLYDASSHQ
VTLLDFGASRAFGTEFTDHYIEVVKAAADGDRDRVLQK
S
QDLKFLTGFETK
AFSDAHVEAVMILGEPFAASGPYDFGAGETARRIQGLIPVLLRHRLRPPPEETYALH
R
KLAGAFLACARLHAHIACRDLFQDTYHRYWASRQTLPLPAAS




Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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